AstraZeneca

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70 repositories

KAZU
Public
Fast, world class biomedical NER
biomedical-text-mining nlp natural-language-processing
Python
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Apache License 2.0
•7•77•26•9•Updated Nov 25, 2024Nov 25, 2024
biomedical-kg-topological-imbalance
Public
Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)
knowledge-graph drug-discovery knowledge-graph-completion target-prediction drug-discovery-knowledge-graph
Jupyter Notebook
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Apache License 2.0
•0•16•0•0•Updated Nov 25, 2024Nov 25, 2024
persist-seq-galaxy-tools-setup
Public
Python
•0•0•0•0•Updated Nov 15, 2024Nov 15, 2024
Ovarian_genomics_HRD
Public
This repository contains the applicable source code that was used for data processing, visualisation and statistical analysis for a publication titled " Patterns of genomic instability in > 2000 patients with ovarian cancer across six clinical trials evaluating olaparib"
R
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Other
•0•1•0•0•Updated Nov 5, 2024Nov 5, 2024
DiffAbXL
Public
The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibody Design".
log-likelihood graph-neural-networks diffusion-models binding-affinity in-silico-design generative-ai antibody-design llm-models
Python
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Apache License 2.0
•5•50•0•0•Updated Oct 25, 2024Oct 25, 2024
runnable
Public
Runnable
Python
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Apache License 2.0
•4•40•7•3•Updated Oct 19, 2024Oct 19, 2024
jazzy
Public
Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.
Python
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Other
•6•78•3•16•Updated Oct 18, 2024Oct 18, 2024
e2-bioprotac
Public
Bioinformatics data analyses - Taylor J. D. et al., Communications Biology 2024, doi: 10.1038/s42003-024-06803-4
Apache License 2.0
•0•1•0•0•Updated Sep 20, 2024Sep 20, 2024
persist
Public
This provides the necessary code and a short tutorial to run PersiST, an exploratory tool for spatial 'omics datasets.
Python
•1•1•0•0•Updated Aug 27, 2024Aug 27, 2024
kgem-in-drug-discovery
Public
Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)
knowledge-graph drug-discovery knowledge-graph-embeddings target-prediction knowledge-graph-embedding-models drug-discovery-knowledge-graph
Python
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Apache License 2.0
•6•32•0•0•Updated Aug 16, 2024Aug 16, 2024
metabolic_classifier
Public
Jupyter Notebook
•0•1•0•3•Updated Jul 30, 2024Jul 30, 2024
lung-tumour-mice-mri
Public
Python
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Apache License 2.0
•1•1•0•0•Updated Jul 18, 2024Jul 18, 2024
MCPL
Public
Official implementation for "An image is worth multiple words: discovering object level concepts using multi-concepts prompts learning" [ICML 2024]]
Python
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Apache License 2.0
•2•13•3•0•Updated Jul 16, 2024Jul 16, 2024
mcpl.github.io
Public
HTML
•0•0•0•0•Updated Jul 16, 2024Jul 16, 2024
awesome-drug-discovery-knowledge-graphs
Public
A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)
knowledge-graph drug-discovery awesome-list drug-discovery-knowledge-graph
Apache License 2.0
•23•211•0•0•Updated Jul 14, 2024Jul 14, 2024
MVDA_exploration_tools
Public
Multivariate data analysis (MVDA) exploration tool is a Python library utilizing the scikit-learn library for partial least squares (PLS) and principal components analysis (PCA).
Jupyter Notebook
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Apache License 2.0
•1•5•0•0•Updated Jun 5, 2024Jun 5, 2024
peptide-tools
Public
Programs to calculate phys-chem properties of synthetic peptides and proteins: isoelectric point and extinction coefficients.
Python
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Apache License 2.0
•5•24•0•0•Updated May 29, 2024May 29, 2024
multimodal-python-course
Public
The purpose of the code is to facilitate a comprehensive understanding of multimodal data science applications within medical domain. The code serves to support the delivery of a cutting-edge workshop designed to introduce researchers to the rapidly evolving field of multimodal data science
Jupyter Notebook
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Apache License 2.0
•0•7•0•0•Updated May 19, 2024May 19, 2024
safeenv
Public
Safe R environment that raises an error if a key has never been defined, instead of returning NULL
R
•0•0•0•0•Updated May 7, 2024May 7, 2024
qsuse
Public
R library that provides an import mechanism like python to import local source files. It is not meant to replace library(), or doublecolon:: prefixing
R
•0•0•0•0•Updated May 7, 2024May 7, 2024
reactive6
Public
Reactive R6 models for Shiny
R
•0•1•0•0•Updated May 7, 2024May 7, 2024
dpp_imp
Public
Improved clinical data imputation via classical and quantum determinantal point processes
Python
•0•1•0•1•Updated Apr 3, 2024Apr 3, 2024
maraca
Public
R package for the creation of "maraca" plots
R
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Other
•0•3•1•0•Updated Mar 18, 2024Mar 18, 2024
roo
Public
A package and environment manager for R
Python
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Apache License 2.0
•1•12•17•5•Updated Mar 8, 2024Mar 8, 2024
SelfPAD
Public
The official implementation of "Improving Antibody Humanness Prediction using Patent Data".
transformer attention antibody patent-data antibody-sequence contrastive-learning immunogenicity-prediction humanness antibody-design
Python
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Apache License 2.0
•4•9•0•0•Updated Feb 14, 2024Feb 14, 2024
ConvCaps-DR
Public
Tensorflow-Keras implementation of deep Convolutional Capsule Networks with Dynamic Routing algorithm
Python
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Apache License 2.0
•0•4•0•3•Updated Feb 1, 2024Feb 1, 2024
CKD_molecular_stratification
Public
R
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Apache License 2.0
•0•1•0•0•Updated Feb 1, 2024Feb 1, 2024
kallisto
Public
Efficiently calculate 3D-features for quantitative structure-activity relationship approaches.
chemistry computational-chemistry quantum-chemistry machinelearning
Python
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Apache License 2.0
•21•62•2•0•Updated Feb 1, 2024Feb 1, 2024
adhce
Public
R
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Apache License 2.0
•0•1•0•0•Updated Jan 19, 2024Jan 19, 2024
onto_merger
Public
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.
algorithm knowledge graph mapping biology ontology knowledge-graph alignment kg ontology-alignment
HTML
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Apache License 2.0
•6•92•2•3•Updated Jan 11, 2024Jan 11, 2024