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    • Tools for accessing, processing and presenting data from Dynamic Routing experiments.
      Jupyter Notebook
      0100Updated Dec 5, 2024Dec 5, 2024
    • ACE

      Public
      R Shiny app for comparison of annotations (e.g., cell type assignments)
      R
      Other
      1180Updated Dec 5, 2024Dec 5, 2024
    • OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
      Python
      Other
      2064130Updated Dec 5, 2024Dec 5, 2024
    • package for comparing spatial transcriptomics datasets
      Jupyter Notebook
      Other
      02101Updated Dec 5, 2024Dec 5, 2024
    • An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
      TypeScript
      BSD 3-Clause "New" or "Revised" License
      13512Updated Dec 5, 2024Dec 5, 2024
    • Repository for storing prototype functionality implementations for the BKP
      Python
      Other
      41862Updated Dec 5, 2024Dec 5, 2024
    • 0010Updated Dec 5, 2024Dec 5, 2024
    • Jupyter Notebook
      3001Updated Dec 4, 2024Dec 4, 2024
    • vis

      Public
      Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats
      TypeScript
      BSD 3-Clause "New" or "Revised" License
      0502Updated Dec 4, 2024Dec 4, 2024
    • txtox

      Public
      Experiments to relate gene expression and anatomical location
      Jupyter Notebook
      0000Updated Dec 4, 2024Dec 4, 2024
    • jem

      Public
      Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.
      HTML
      Other
      3300Updated Dec 4, 2024Dec 4, 2024
    • Basic tools for parsing subject, session, date and time associated with data from the Mindscope Neuropixels team, in the cloud.
      Python
      0000Updated Dec 4, 2024Dec 4, 2024
    • Shared repo for EM connectomics and Array Tomography render based image processing modules
      Python
      BSD 2-Clause "Simplified" License
      414131Updated Dec 4, 2024Dec 4, 2024
    • MIES

      Public
      Multichannel Igor Electrophysiology Suite
      IGOR Pro
      Other
      8242879Updated Dec 4, 2024Dec 4, 2024
    • Tools for processing stim data from Sam's DynamicRoutingTask, compatible with data in the cloud.
      Python
      MIT License
      0000Updated Dec 4, 2024Dec 4, 2024
    • cplAE_MET

      Public
      Coupled autoencoder extension for MET analysis.
      Jupyter Notebook
      0100Updated Dec 3, 2024Dec 3, 2024
    • bmtk

      Public
      Brain Modeling Toolkit
      Python
      BSD 3-Clause "New" or "Revised" License
      892755810Updated Dec 3, 2024Dec 3, 2024
    • Repository to track training stages and regimens for visual behavior
      Python
      Other
      43140Updated Dec 2, 2024Dec 2, 2024
    • sourcesep

      Public
      Jupyter Notebook
      0000Updated Nov 30, 2024Nov 30, 2024
    • Repository for tools developed for axonal connectomics
      Jupyter Notebook
      Other
      1230Updated Nov 27, 2024Nov 27, 2024
    • improved clustering pipeline for transcriptomic data
      Python
      Other
      14175Updated Nov 27, 2024Nov 27, 2024
    • Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.
      Python
      MIT License
      0300Updated Nov 27, 2024Nov 27, 2024
    • Distributed training of multi-arm variational autoencoding networks
      Jupyter Notebook
      MIT License
      0100Updated Nov 26, 2024Nov 26, 2024
    • sciduck

      Public
      Jupyter Notebook
      2140Updated Nov 26, 2024Nov 26, 2024
    • Code base generating formatted data tables that streamlines data analysis process for ephys production metadata.
      Python
      0000Updated Nov 25, 2024Nov 25, 2024
    • aisynphys

      Public
      Analysis tools specific to the aiephys multipatch project.
      Python
      Other
      191110Updated Nov 25, 2024Nov 25, 2024
    • Python package for analyzing behavioral data for Brain Observatory: Visual Behavior
      Jupyter Notebook
      Other
      622656Updated Nov 25, 2024Nov 25, 2024
    • Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
      Python
      11540Updated Nov 23, 2024Nov 23, 2024
    • 0120Updated Nov 23, 2024Nov 23, 2024
    • Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.
      Jupyter Notebook
      0000Updated Nov 22, 2024Nov 22, 2024