WIP #1
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| # Inspired by the template in the {targets} package | |
| # https://github.com/ropensci/targets/blob/3b16f37ba5cdca710adbb81c2301f6b1d7432cfb/inst/templates/github_actions.yaml | |
| # This file is licensed under the MIT | |
| # Copyright © 2023 Bruno Rodrigues and Philipp Baumann | |
| # Permission is hereby granted, free of charge, to any person obtaining a copy | |
| # of this software and associated documentation files (the "Software"), to deal | |
| # in the Software without restriction, including without limitation the rights | |
| # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | |
| # copies of the Software, and to permit persons to whom the Software is | |
| # furnished to do so, subject to the following conditions: | |
| # | |
| # The above copyright notice and this permission notice shall be included in all | |
| # copies or substantial portions of the Software. | |
| # | |
| # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | |
| # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | |
| # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | |
| # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | |
| # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | |
| # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | |
| # SOFTWARE. | |
| name: run-pipeline | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| jobs: | |
| targets: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Nix | |
| uses: DeterminateSystems/nix-installer-action@main | |
| with: | |
| logger: pretty | |
| log-directives: nix_installer=trace | |
| backtrace: full | |
| - name: Nix cache | |
| uses: DeterminateSystems/magic-nix-cache-action@main | |
| - name: Build development environment | |
| run: | | |
| nix-build | |
| - name: Check if previous runs exists | |
| id: runs-exist | |
| run: git ls-remote --exit-code --heads origin targets-runs | |
| continue-on-error: true | |
| - name: Checkout previous run | |
| if: steps.runs-exist.outcome == 'success' | |
| uses: actions/checkout@v2 | |
| with: | |
| ref: targets-runs | |
| fetch-depth: 1 | |
| path: .targets-runs | |
| - name: Restore output files from the previous run | |
| if: steps.runs-exist.outcome == 'success' | |
| run: | | |
| nix-shell default.nix --run "Rscript -e 'for (dest in scan(\".targets-runs/.targets-files\", what = character())) { | |
| source <- file.path(\".targets-runs\", dest) | |
| if (!file.exists(dirname(dest))) dir.create(dirname(dest), recursive = TRUE) | |
| if (file.exists(source)) file.rename(source, dest) | |
| }'" | |
| - name: Run model | |
| run: | | |
| nix-shell default.nix --run "Rscript -e 'targets::tar_make()'" | |
| - name: Identify files that the targets pipeline produced | |
| run: git ls-files -mo --exclude=renv > .targets-files | |
| - name: Create the runs branch if it does not already exist | |
| if: steps.runs-exist.outcome != 'success' | |
| run: git checkout --orphan targets-runs | |
| - name: Put the worktree in the runs branch if the latter already exists | |
| if: steps.runs-exist.outcome == 'success' | |
| run: | | |
| rm -r .git | |
| mv .targets-runs/.git . | |
| rm -r .targets-runs | |
| - name: Upload latest run | |
| run: | | |
| git config --local user.name "GitHub Actions" | |
| git config --local user.email "[email protected]" | |
| rm -r .gitignore .github/workflows | |
| git add --all -- ':!renv' | |
| for file in $(git ls-files -mo --exclude=renv) | |
| do | |
| git add --force $file | |
| done | |
| git commit -am "Run pipeline" | |
| git push origin targets-runs | |
| - name: Prepare failure artifact | |
| if: failure() | |
| run: rm -rf .git .github .targets-files .targets-runs | |
| - name: Post failure artifact | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: . |