Add/update analyzers plugins

analyzers/AB7500Fast/pom.xml

@@ -0,0 +1,79 @@
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
+  <modelVersion>4.0.0</modelVersion>
+  <parent>
+    <groupId>org.openelisglobal</groupId>
+    <artifactId>openelisglobal-plugins</artifactId>
+    <version>0.0.1</version>
+    <relativePath>../../pom.xml</relativePath>
+  </parent>
+  <groupId>org.openelisglobal.plugins</groupId>
+  <artifactId>AB7500Fast</artifactId>
+  <packaging>jar</packaging>
+    <properties>
+  	<project.build.sourceEncoding>
+  		UTF-8
+  	</project.build.sourceEncoding> 
+  </properties>
+  <dependencies>
+		<dependency>
+			<groupId>commons-logging</groupId>
+			<artifactId>commons-logging</artifactId>
+			<version>1.2</version>
+		</dependency>
+		<dependency>
+			<groupId>commons-validator</groupId>
+			<artifactId>commons-validator</artifactId>
+			<version>1.6</version>
+		</dependency>
+
+	</dependencies>
+    <build>
+    <sourceDirectory>src</sourceDirectory>
+    <resources>
+      <resource>
+        <directory>src</directory>
+        <excludes>
+          <exclude>**/*.java</exclude>
+        </excludes>
+      </resource>
+    </resources>
+    <plugins>
+      <plugin>
+        <artifactId>maven-compiler-plugin</artifactId>
+        <version>3.8.0</version>
+        <configuration>
+          <source>1.8</source>
+          <target>1.8</target>
+        </configuration>
+      </plugin>
+		<plugin>
+			<artifactId>maven-resources-plugin</artifactId>
+			<version>2.4.3</version>
+			<executions>
+				<execution>
+					<id>copy-resources</id>
+					<!-- here the phase you need -->
+					<phase>install</phase>
+					<goals>
+						<goal>copy-resources</goal>
+					</goals>
+					<configuration>
+						<outputDirectory>${project.basedir}/../../plugins</outputDirectory>
+						<resources>
+							<resource>
+								<!-- Get main artifact -->
+								<directory>target/</directory>
+								<includes>
+									<include>${project.build.finalName}.jar</include>
+								</includes>
+								<!-- Don't filter binary files -->
+								<filtering>false</filtering>
+							</resource>
+						</resources>
+					</configuration>
+				</execution>
+			</executions>
+		</plugin>
+    </plugins>
+  </build>
+</project>

analyzers/AB7500Fast/src/main/java/AB7500Fast.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<openElisGlobalPlugin>
+<version>1.0</version>
+<analyzerImporter>
+<extension_point path="org.openelisglobal.plugin.AnalyzerImporterPlugin" >
+	<extension path="oe.plugin.analyzer.AB7500VLAnalyzer" />
+	<description value="Virologie: AB 7500 VL analyzer importer" />
+</extension_point>
+</analyzerImporter>
+<menu>
+    <extension_point path="org.openelisglobal.plugin.MenuPlugin" >
+	<extension path="oe.plugin.analyzer.AB7500VLMenu" />
+	<description value="Virologie: AB 7500 VL Analyzer menu" />
+</extension_point>
+</menu>
+<permission>
+    <extension_point path="org.openelisglobal.plugin.PermissionPlugin" >
+        <extension path="oe.plugin.analyzer.AB7500VLPermission" />
+        <description value="Virologie: AB 7500 VL Analyzer permission" />
+    </extension_point>
+</permission>
+</openElisGlobalPlugin>

analyzers/AB7500Fast/src/main/java/oe/plugin/analyzer/AB7500VLAnalyzer.java

@@ -0,0 +1,58 @@
+/*
+ * The contents of this file are subject to the Mozilla Public License
+ * Version 1.1 (the "License"); you may not use this file except in
+ * compliance with the License. You may obtain a copy of the License at
+ * http://www.mozilla.org/MPL/
+ *
+ * Software distributed under the License is distributed on an "AS IS"
+ * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
+ * License for the specific language governing rights and limitations under
+ * the License.
+ *
+ * The Original Code is OpenELIS code.
+ *
+ * Copyright (C) ITECH, University of Washington, Seattle WA.  All Rights Reserved.
+ */
+
+package oe.plugin.analyzer;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import org.openelisglobal.analyzerimport.analyzerreaders.AnalyzerLineInserter;
+import org.openelisglobal.common.services.PluginAnalyzerService;
+import org.openelisglobal.plugin.AnalyzerImporterPlugin;
+
+public class AB7500VLAnalyzer implements AnalyzerImporterPlugin {
+//private static final String DELIMITER = ",";
+	private static final CharSequence AB7500VL_INDICATOR = "sds7500fast";
+
+	int InstrumentIndex = -1;
+
+	public boolean connect() {
+//  List nameMappinng = new ArrayList();
+		List<PluginAnalyzerService.TestMapping> nameMappinng = new ArrayList<PluginAnalyzerService.TestMapping>();
+		nameMappinng.add(new PluginAnalyzerService.TestMapping("Quantity", "Viral Load"));
+
+		PluginAnalyzerService.getInstance().addAnalyzerDatabaseParts("AB7500VLAnalyzer", "Plugin for AB 7500 analyzer",
+				nameMappinng);
+		PluginAnalyzerService.getInstance().registerAnalyzer(this);
+
+		return true;
+	}
+
+	public boolean isTargetAnalyzer(List<String> lines) {
+		for (int j = 0; j < lines.size(); j++) {
+			if (lines.get(j).contains(AB7500VL_INDICATOR))
+				return true;
+
+		}
+
+		return false;
+	}
+
+	public AnalyzerLineInserter getAnalyzerLineInserter() {
+		return new AB7500VLAnalyzerImplementation();
+	}
+
+}