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Update doc/protocols_pipelines.rst
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Co-authored-by: Nezar Abdennur <[email protected]>
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golobor and nvictus authored Mar 28, 2024
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Expand Up @@ -109,7 +109,7 @@ Technical tips
Pairtools recognize .bam, .gz and .lz4 file extensions and automatically compress and decompress files on the fly.
Compression saves space, and reduces I/O overhead at a relatively minor CPU cost.

- Parallelize tasks and manage resources effectively for faster execution.
- **Parallelize tasks and manage resources effectively for faster execution.**
Each pairtool has the CLI flags --nproc-in and --nproc-out to control the number of cores dedicated
to input decompression and output compression. Additionally, `pairtools sort` parallelizes sorting with `--nproc`.ß

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