Update python-publish.yml #19

	# # This workflow will upload a Python Package using Twine when a release is created
	# # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries

	# name: Upload Python Package

	# on:
	# release:
	# types: [created]

	# jobs:
	# deploy:

	# runs-on: ubuntu-latest

	# steps:
	# - uses: actions/checkout@v2
	# - name: Set up Python
	# uses: actions/setup-python@v2
	# with:
	# python-version: '3.10'
	# - name: Install dependencies
	# run: \|
	# python -m pip install --upgrade pip
	# pip install setuptools wheel twine cython pysam numpy
	# - name: Build and publish
	# env:
	# TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
	# TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
	# run: \|
	# python setup.py sdist
	# twine upload dist/*


	name: Publish Python Package to PyPI

	on:
	release:
	types: [published]
	workflow_dispatch:

	jobs:
	Publish:
	# prevents this action from running on forks
	if: github.repository == 'open2c/pairtools'

	runs-on: ubuntu-latest
	permissions:
	id-token: write

	steps:
	- name: Checkout, install, build
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: "3.x"
	cache: 'pip' # caching pip dependencies
	- run: \|
	python -m pip install --upgrade pip wheel setuptools build
	python -m pip install --upgrade cython pysam
	python -m pip install -r requirements-dev.txt
	python -m build

	- name: Publish distribution 📦 to PyPI
	uses: pypa/gh-action-pypi-publish@release/v1

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