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62 Open 248 Closed
62 Open 248 Closed
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Issues list

Neither from matplotlib.cm import register_cmap nor from matplotlib.colormaps import register works in cooltools 0.7.1 for supporting matplotlib 3.9
#544 opened Dec 11, 2024 by ljw20180420
6
The error in "cooltools.dots"
#543 opened Dec 6, 2024 by jiangfl2854
IndexError: index 0 is out of bounds for axis 0 with size 0
#542 opened Nov 8, 2024 by shRDJr
Error when running cooltools random-sample
#541 opened Oct 23, 2024 by GMFranceschini
4
Can not install cooltools
#538 opened Sep 15, 2024 by xiasijian
1
Control/Observed whole genome.
#537 opened Sep 6, 2024 by rkash
1
Performance of obs/exp pileups is significantly lower than of obs pileups with nproc > 1
#536 opened Aug 21, 2024 by dmitrymyl
update cooltools in conda
#526 opened Jul 5, 2024 by fys666
cooltools virtual4c
#519 opened May 22, 2024 by BenxiaHu
4
first diagonal NaNs for smoothed expected_cis
#509 opened Mar 11, 2024 by gfudenberg
allow alternate reductions for aggregation across diagonals enhancement
#507 opened Mar 4, 2024 by gfudenberg
synchronize CLI and API defaults for get_expected_cis smoothing & aggregation enhancement
#506 opened Mar 4, 2024 by gfudenberg
migrate log-smoothing to mini-library enhancement
#505 opened Mar 4, 2024 by gfudenberg
2
insulation & edge effects: consider masking? question
#503 opened Feb 27, 2024 by gfudenberg
snippers: order of "select" and "snip" matters, but should it
#502 opened Feb 18, 2024 by sergpolly
pileup around centromeres
#491 opened Jan 28, 2024 by ratheraarif
16
Needs a "cool" logo
#490 opened Jan 28, 2024 by thomas-reimonn
systematic treatment of floating point warnings from numpy
#482 opened Jan 18, 2024 by sergpolly
Unable to install with poetry
#467 opened Nov 6, 2023 by thomas-reimonn
5
Issue with cooltools.api.snipping.pileup() compatibility with bioframe/core/construction.py", line 150 question
#462 opened Oct 6, 2023 by haleybianchi
5
Downsampling and cis counts enhancement
#458 opened Aug 7, 2023 by ddepierre
2
snippers use different arithmetics than cooler for determining bins from coordinates bug
#446 opened May 31, 2023 by Phlya
@agalitsyna
eigs_cis: input checking enhancement
#428 opened Mar 30, 2023 by gfudenberg
2
pileup: bed vs. bedpe inference enhancement
#427 opened Mar 30, 2023 by gfudenberg
2
cooltools stats CLI enhancement
#415 opened Feb 2, 2023 by agalitsyna
1
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