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I got a warning message below when I run cooltools with any options, such as with -h or -V
/home/younso/anaconda3/envs/hic/lib/python3.8/site-packages/cooltools/lib/numutils.py:652: NumbaDeprecationWarning: The 'nopython' keyword argument was not supplied to the 'numba.jit' decorator. The implicit default value for this argument is currently False, but it will be changed to True in Numba 0.59.0. See https://numba.readthedocs.io/en/stable/reference/deprecation.html#deprecation-of-object-mode-fall-back-behaviour-when-using-jit for details.
def iterative_correction_symmetric(
/home/younso/anaconda3/envs/hic/lib/python3.8/site-packages/cooltools/lib/numutils.py:727: NumbaDeprecationWarning: The 'nopython' keyword argument was not supplied to the 'numba.jit' decorator. The implicit default value for this argument is currently False, but it will be changed to True in Numba 0.59.0. See https://numba.readthedocs.io/en/stable/reference/deprecation.html#deprecation-of-object-mode-fall-back-behaviour-when-using-jit for details.
def iterative_correction_asymmetric(x, max_iter=1000, tol=1e-5, verbose=False):
Usage: cooltools [OPTIONS] COMMAND [ARGS]...
As you can see, I'm using conda environment and the version of Numba is 0.57.0 which can't be update to 0.59 cause of my python and other packages versions. (I think this is for preserving conflict. there are no higher version in conda install or pip install)
How can I solve this problem? If this warning doesn't affect performance, it could be ignored. But I worry about the performance because of this warning message.
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I got a warning message below when I run cooltools with any options, such as with -h or -V
As you can see, I'm using conda environment and the version of Numba is 0.57.0 which can't be update to 0.59 cause of my python and other packages versions. (I think this is for preserving conflict. there are no higher version in conda install or pip install)
How can I solve this problem? If this warning doesn't affect performance, it could be ignored. But I worry about the performance because of this warning message.
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