Feature: Align Bioportal and AgroPortal - part 5 - Better concept details view

Gemfile.lock

@@ -93,16 +93,15 @@ GEM
     bcrypt_pbkdf (1.1.1)
     bcrypt_pbkdf (1.1.1-arm64-darwin)
     bcrypt_pbkdf (1.1.1-x86_64-darwin)
-    bigdecimal (3.1.8)
+    bigdecimal (3.1.9)
     bindex (0.8.1)
     bootsnap (1.18.4)
       msgpack (~> 1.2)
     bootstrap (5.2.3)
       autoprefixer-rails (>= 9.1.0)
       popper_js (>= 2.11.6, < 3)
       sassc-rails (>= 2.0.0)
-    brakeman (6.2.2)
-      racc
+    brakeman (5.4.1)
     bugsnag (6.27.1)
       concurrent-ruby (~> 1.0)
     builder (3.3.0)
@@ -117,19 +116,19 @@ GEM
       capistrano (~> 3.0)
     capistrano-passenger (0.2.1)
       capistrano (~> 3.0)
-    capistrano-rails (1.6.3)
+    capistrano-rails (1.7.0)
       capistrano (~> 3.1)
       capistrano-bundler (>= 1.1, < 3)
     capistrano-rbenv (2.2.0)
       capistrano (~> 3.1)
       sshkit (~> 1.3)
     capistrano-yarn (2.0.2)
       capistrano (~> 3.0)
-    capybara (3.40.0)
+    capybara (3.39.2)
       addressable
       matrix
       mini_mime (>= 0.1.3)
-      nokogiri (~> 1.11)
+      nokogiri (~> 1.8)
       rack (>= 1.6.0)
       rack-test (>= 0.6.3)
       regexp_parser (>= 1.5, < 3.0)
@@ -144,45 +143,41 @@ GEM
       bigdecimal
       rexml
     crass (1.0.6)
-    css_parser (1.19.1)
+    css_parser (1.17.1)
       addressable
-    csv (3.3.0)
+    csv (3.3.2)
     dalli (3.2.8)
     date (3.4.1)
-    debug (1.9.2)
+    debug (1.10.0)
       irb (~> 1.10)
       reline (>= 0.3.8)
     deepl-rb (3.1.0)
     diff-lcs (1.5.1)
     docile (1.4.1)
     domain_name (0.6.20240107)
     ed25519 (1.3.0)
-    erubi (1.13.0)
+    erubi (1.13.1)
     erubis (2.7.0)
-    excon (1.2.2)
+    excon (1.2.3)
     execjs (2.10.0)
-    faraday (2.12.1)
-      faraday-net_http (>= 2.0, < 3.5)
-      json
-      logger
-    faraday-excon (2.3.0)
-      excon (>= 1.0.0)
-      faraday (>= 2.11.0, < 3)
-    faraday-multipart (1.0.4)
-      multipart-post (~> 2)
-    faraday-net_http (3.4.0)
-      net-http (>= 0.5.0)
-    ffi (1.17.0-aarch64-linux-gnu)
-    ffi (1.17.0-arm64-darwin)
-    ffi (1.17.0-x86_64-darwin)
-    ffi (1.17.0-x86_64-linux-gnu)
+    faraday (2.8.1)
+      base64
+      faraday-net_http (>= 2.0, < 3.1)
+      ruby2_keywords (>= 0.0.4)
+    faraday-excon (2.1.0)
+      excon (>= 0.27.4)
+      faraday (~> 2.0)
+    faraday-multipart (1.1.0)
+      multipart-post (~> 2.0)
+    faraday-net_http (3.0.2)
+    ffi (1.16.3)
     flag-icons-rails (3.4.6.1)
       sass-rails
     globalid (1.2.1)
       activesupport (>= 6.1)
     graphql (2.0.31)
       base64
-    graphql-client (0.24.0)
+    graphql-client (0.25.0)
       activesupport (>= 3.0)
       graphql (>= 1.13.0)
     haml (5.2.2)
@@ -195,8 +190,7 @@ GEM
       railties (>= 5.1)
     hashdiff (1.1.2)
     hashie (5.0.0)
-    highline (3.1.1)
-      reline
+    highline (2.1.0)
     html2haml (2.3.0)
       erubis (~> 2.7.0)
       haml (>= 4.0)
@@ -205,7 +199,7 @@ GEM
     htmlbeautifier (1.4.3)
     htmlentities (4.3.4)
     http-accept (1.7.0)
-    http-cookie (1.0.7)
+    http-cookie (1.0.8)
       domain_name (~> 0.5)
     i18n (1.14.6)
       concurrent-ruby (~> 1.0)
@@ -229,7 +223,7 @@ GEM
       activesupport (>= 3.0)
       nokogiri (>= 1.6)
     io-console (0.8.0)
-    irb (1.14.1)
+    irb (1.14.3)
       rdoc (>= 4.0.0)
       reline (>= 0.4.2)
     iso-639 (0.3.8)
@@ -242,7 +236,7 @@ GEM
       railties (>= 3.2.16)
     jsbundling-rails (1.3.1)
       railties (>= 6.0.0)
-    json (2.9.0)
+    json (2.9.1)
     language_server-protocol (3.17.0.3)
     launchy (3.0.1)
       addressable (~> 2.8)
@@ -257,8 +251,8 @@ GEM
     listen (3.9.0)
       rb-fsevent (~> 0.10, >= 0.10.3)
       rb-inotify (~> 0.9, >= 0.9.10)
-    logger (1.6.2)
-    loofah (2.23.1)
+    logger (1.6.4)
+    loofah (2.24.0)
       crass (~> 1.0.2)
       nokogiri (>= 1.12.0)
     lookbook (1.5.5)
@@ -286,9 +280,10 @@ GEM
     mime-types (3.6.0)
       logger
       mime-types-data (~> 3.2015)
-    mime-types-data (3.2024.1203)
+    mime-types-data (3.2025.0107)
     mini_mime (1.1.5)
-    minitest (5.25.3)
+    mini_portile2 (2.8.8)
+    minitest (5.25.4)
     msgpack (1.7.5)
     multi_json (1.15.0)
     multipart-post (2.4.1)
@@ -313,17 +308,20 @@ GEM
       net-protocol
     net-ssh (7.3.0)
     netrc (0.11.0)
-    newrelic_rpm (9.16.0)
+    newrelic_rpm (9.16.1)
     nio4r (2.7.4)
-    nokogiri (1.16.8-aarch64-linux)
+    nokogiri (1.15.7)
+      mini_portile2 (~> 2.8.2)
+      racc (~> 1.4)
+    nokogiri (1.15.7-aarch64-linux)
       racc (~> 1.4)
-    nokogiri (1.16.8-arm64-darwin)
+    nokogiri (1.15.7-arm64-darwin)
       racc (~> 1.4)
-    nokogiri (1.16.8-x86_64-darwin)
+    nokogiri (1.15.7-x86_64-darwin)
       racc (~> 1.4)
-    nokogiri (1.16.8-x86_64-linux)
+    nokogiri (1.15.7-x86_64-linux)
       racc (~> 1.4)
-    oj (3.16.7)
+    oj (3.16.9)
       bigdecimal (>= 3.0)
       ostruct (>= 0.2)
     omniauth (2.1.2)
@@ -339,21 +337,21 @@ GEM
       ast (~> 2.4.1)
       racc
     popper_js (2.11.8)
-    pry (0.15.0)
+    pry (0.15.2)
       coderay (~> 1.1)
       method_source (~> 1.0)
-    psych (5.2.1)
+    psych (5.2.2)
       date
       stringio
-    public_suffix (6.0.1)
+    public_suffix (5.1.1)
     puma (5.6.9)
       nio4r (~> 2.0)
     racc (1.8.1)
     rack (2.2.10)
     rack-protection (3.2.0)
       base64 (>= 0.1.0)
       rack (~> 2.2, >= 2.2.4)
-    rack-test (2.1.0)
+    rack-test (2.2.0)
       rack (>= 1.3)
     rails (7.0.8)
       actioncable (= 7.0.8)
@@ -373,7 +371,7 @@ GEM
       activesupport (>= 5.0.0)
       minitest
       nokogiri (>= 1.6)
-    rails-html-sanitizer (1.6.1)
+    rails-html-sanitizer (1.6.2)
       loofah (~> 2.21)
       nokogiri (>= 1.15.7, != 1.16.7, != 1.16.6, != 1.16.5, != 1.16.4, != 1.16.3, != 1.16.2, != 1.16.1, != 1.16.0.rc1, != 1.16.0)
     rails-i18n (7.0.10)
@@ -391,20 +389,20 @@ GEM
     rb-fsevent (0.11.2)
     rb-inotify (0.11.1)
       ffi (~> 1.0)
-    rdoc (6.8.1)
+    rdoc (6.10.0)
       psych (>= 4.0.0)
     recaptcha (5.9.0)
       json
     redcarpet (3.6.0)
-    regexp_parser (2.9.3)
-    reline (0.5.12)
+    regexp_parser (2.10.0)
+    reline (0.6.0)
       io-console (~> 0.5)
     rest-client (2.1.0)
       http-accept (>= 1.7.0, < 2.0)
       http-cookie (>= 1.0.2, < 2.0)
       mime-types (>= 1.16, < 4.0)
       netrc (~> 0.8)
-    rexml (3.3.9)
+    rexml (3.4.0)
     rouge (4.5.1)
     rspec-core (3.13.2)
       rspec-support (~> 3.13.0)
@@ -423,7 +421,7 @@ GEM
       rspec-mocks (~> 3.13)
       rspec-support (~> 3.13)
     rspec-support (3.13.2)
-    rubocop (1.69.1)
+    rubocop (1.69.2)
       json (~> 2.3)
       language_server-protocol (>= 3.17.0)
       parallel (~> 1.10)
@@ -433,13 +431,14 @@ GEM
       rubocop-ast (>= 1.36.2, < 2.0)
       ruby-progressbar (~> 1.7)
       unicode-display_width (>= 2.4.0, < 4.0)
-    rubocop-ast (1.36.2)
+    rubocop-ast (1.37.0)
       parser (>= 3.3.1.0)
     ruby-progressbar (1.13.0)
+    ruby2_keywords (0.0.5)
     ruby_parser (3.21.1)
       racc (~> 1.5)
       sexp_processor (~> 4.16)
-    rubyzip (2.3.2)
+    rubyzip (2.4.1)
     sass-rails (6.0.0)
       sassc-rails (~> 2.1, >= 2.1.1)
     sassc (2.4.0)
@@ -451,7 +450,7 @@ GEM
       sprockets-rails
       tilt
     select2-rails (4.0.13)
-    selenium-webdriver (4.16.0)
+    selenium-webdriver (4.9.0)
       rexml (~> 3.2, >= 3.2.5)
       rubyzip (>= 1.2.2, < 3.0)
       websocket (~> 1.0)
@@ -486,16 +485,16 @@ GEM
     terser (1.2.4)
       execjs (>= 0.3.0, < 3)
     thor (1.3.2)
-    tilt (2.4.0)
+    tilt (2.5.0)
     time (0.4.1)
       date
-    timeout (0.4.2)
+    timeout (0.4.3)
     turbo-rails (2.0.11)
       actionpack (>= 6.0.0)
       railties (>= 6.0.0)
     tzinfo (2.0.6)
       concurrent-ruby (~> 1.0)
-    unicode-display_width (3.1.2)
+    unicode-display_width (3.1.3)
       unicode-emoji (~> 4.0, >= 4.0.4)
     unicode-emoji (4.0.4)
     uri (1.0.2)
@@ -513,7 +512,8 @@ GEM
       crack (>= 0.3.2)
       hashdiff (>= 0.4.0, < 2.0.0)
     websocket (1.2.11)
-    websocket-driver (0.7.6)
+    websocket-driver (0.7.7)
+      base64
       websocket-extensions (>= 0.1.0)
     websocket-extensions (0.1.5)
     will_paginate (3.3.1)
@@ -525,6 +525,7 @@ GEM
 PLATFORMS
   aarch64-linux
   arm64-darwin
+  ruby
   x86_64-darwin
   x86_64-linux
 

app/assets/javascripts/bp_mappings.js.erb

@@ -3,18 +3,6 @@
 // The count returned may not match the actual number of mappings
 // To get around this, we re-calculate based on the mapping table size
 
-function updateMappingCount() {
-  var rows = jQuery("#concept_mappings_table tbody tr"), mappings_count = null;
-  rows.first().children("td").each(function() {
-    if (this.innerHTML.indexOf("no mappings") > -1) {
-      mappings_count = 0;
-    }
-  });
-  if (mappings_count === null) {
-    mappings_count = rows.length;
-  }
-  jQuery("#mapping_count").html(mappings_count);
-}
 
 // Also in bp_create_mappings.js
 function updateMappingDeletePermissions() {
@@ -67,7 +55,6 @@ function loadMappings(value) {
 }
 
 jQuery(document).ready(function(){
-  updateMappingCount();
   updateMappingDeletePermissions();
 
   jQuery("#search_ontologies").chosen({search_contains: true, width:"100%"});
@@ -83,7 +70,6 @@ jQuery(document).ready(function(){
   jQuery("#mappings-help").on("click", bpPopWindow);
 });
 
-jQuery(document).bind("tree_changed", updateMappingCount);
 
 // deleteMappings() is a callback that is called by "#delete_mappings_button" created in
 // /app/views/mappings/_concept_mappings.html.haml
@@ -132,7 +118,6 @@ function deleteMappings() {
         jQuery("#" + rowId).css("border", "red solid");
       }
 
-      jQuery("#mapping_count").html(jQuery("#mapping_details tbody tr:visible").size());
       jQuery.bioportal.ont_pages["mappings"].retrieve_and_publish();
       updateMappingDeletePermissions();
     },