Add R package. #89
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| name: CI - Python | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["main"] | |
| workflow_dispatch: | |
| env: | |
| # Our tests may contain a number of stochastic elements. Setting a seed will make sure they are | |
| # not flaky (but also hide potential issues). | |
| SEED: "0" | |
| cmdstanVersion: "2.31.0" | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| module: ["stan", "torch", "util"] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| name: Package tests and linting | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: "actions/checkout@v2" | |
| - uses: "actions/setup-python@v2" | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ${{ env.pythonLocation }} | |
| /home/runner/.cmdstan | |
| key: ${{ env.pythonLocation }}-${{ hashFiles(format('{0}/test_requirements.txt', matrix.module)) }}-${{ env.cmdstanVersion }}-v1 | |
| - name: Install python dependencies | |
| run: pip install -r ${{ matrix.module }}/test_requirements.txt | |
| - name: Install cmdstanpy | |
| run: python -m cmdstanpy.install_cmdstan --version ${{ env.cmdstanVersion }} | |
| if: matrix.module == 'stan' | |
| - name: Run the tests | |
| run: doit tests:${{ matrix.module }} | |
| - name: Lint the code | |
| run: doit lint:${{ matrix.module }} | |
| - name: Build the documentation | |
| run: doit docs:${{ matrix.module }} | |
| - name: Run doctests | |
| run: doit doctest:${{ matrix.module }} | |
| - name: Build the package | |
| run: doit package:${{ matrix.module }} | |
| - name: Upload the package to test pypi | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| packages_dir: ${{ matrix.module }}/dist | |
| repository_url: https://test.pypi.org/legacy/ | |
| skip_existing: true | |
| - name: Upload the package to pypi on `main` only | |
| if: github.event_name == 'push' && github.ref == 'refs/heads/main' && github.repository_owner == 'onnela-lab' | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| packages_dir: ${{ matrix.module }}/dist | |
| skip_existing: true |