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@@ -107,37 +108,42 @@
 <code>#include &lt;set&gt;</code><br />
 <code>#include &lt;stdexcept&gt;</code><br />
 <code>#include &lt;vector&gt;</code><br />
-<code>#include &quot;<a class="el" href="_coarse___cell___container_8h_source.html">Coarse_Cell_Container.h</a>&quot;</code><br />
-<code>#include &quot;<a class="el" href="_dual___graph_8h_source.html">Dual_Graph.h</a>&quot;</code><br />
-<code>#include &quot;<a class="el" href="_neighbourhood_8h_source.html">Neighbourhood.h</a>&quot;</code><br />
-<code>#include &quot;<a class="el" href="_util_8h_source.html">Util.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="_coarse___cell___container_8h_source.html">CoMMA/Coarse_Cell_Container.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="_dual___graph_8h_source.html">CoMMA/Dual_Graph.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="_neighbourhood_8h_source.html">CoMMA/Neighbourhood.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="_util_8h_source.html">CoMMA/Util.h</a>&quot;</code><br />
 </div>
 <p><a href="_agglomerator_8h_source.html">Go to the source code of this file.</a></p>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
 Classes</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_agglomerator.html">Agglomerator&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A class responsible to do the interface between the different kinds of agglomerator.  <a href="class_agglomerator.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classcomma_1_1_agglomerator.html">comma::Agglomerator&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A class responsible to do the interface between the different kinds of agglomerator.  <a href="classcomma_1_1_agglomerator.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_agglomerator___anisotropic.html">Agglomerator_Anisotropic&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="class_agglomerator___anisotropic.html" title="Agglomerator_Anisotropic class is a child class of the Agglomerator class that specializes the implem...">Agglomerator_Anisotropic</a> class is a child class of the <a class="el" href="class_agglomerator.html" title="A class responsible to do the interface between the different kinds of agglomerator.">Agglomerator</a> class that specializes the implementation to the case of Anisotropic agglomeration.  <a href="class_agglomerator___anisotropic.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classcomma_1_1_agglomerator___anisotropic.html">comma::Agglomerator_Anisotropic&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classcomma_1_1_agglomerator___anisotropic.html" title="Agglomerator_Anisotropic class is a child class of the Agglomerator class that specializes the implem...">Agglomerator_Anisotropic</a> class is a child class of the <a class="el" href="classcomma_1_1_agglomerator.html" title="A class responsible to do the interface between the different kinds of agglomerator.">Agglomerator</a> class that specializes the implementation to the case of Anisotropic agglomeration.  <a href="classcomma_1_1_agglomerator___anisotropic.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_agglomerator___isotropic.html">Agglomerator_Isotropic&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="class_agglomerator___isotropic.html" title="Agglomerator_Isotropic class is a child class of the Agglomerator class that specializes the implemen...">Agglomerator_Isotropic</a> class is a child class of the <a class="el" href="class_agglomerator.html" title="A class responsible to do the interface between the different kinds of agglomerator.">Agglomerator</a> class that specializes the implementation to the case of Isotropic agglomeration.  <a href="class_agglomerator___isotropic.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classcomma_1_1_agglomerator___isotropic.html">comma::Agglomerator_Isotropic&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classcomma_1_1_agglomerator___isotropic.html" title="Agglomerator_Isotropic class is a child class of the Agglomerator class that specializes the implemen...">Agglomerator_Isotropic</a> class is a child class of the <a class="el" href="classcomma_1_1_agglomerator.html" title="A class responsible to do the interface between the different kinds of agglomerator.">Agglomerator</a> class that specializes the implementation to the case of Isotropic agglomeration.  <a href="classcomma_1_1_agglomerator___isotropic.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_agglomerator___biconnected.html">Agglomerator_Biconnected&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Child class of <a class="el" href="class_agglomerator___isotropic.html" title="Agglomerator_Isotropic class is a child class of the Agglomerator class that specializes the implemen...">Agglomerator_Isotropic</a> where is implemented a specific biconnected algorithm for the agglomeration. We call it biconnected case, but it is the greedy algorithm in reality.  <a href="class_agglomerator___biconnected.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classcomma_1_1_agglomerator___biconnected.html">comma::Agglomerator_Biconnected&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Child class of <a class="el" href="classcomma_1_1_agglomerator___isotropic.html" title="Agglomerator_Isotropic class is a child class of the Agglomerator class that specializes the implemen...">Agglomerator_Isotropic</a> where is implemented a specific biconnected algorithm for the agglomeration. We call it biconnected case, but it is the greedy algorithm in reality.  <a href="classcomma_1_1_agglomerator___biconnected.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_agglomerator___iterative.html">Agglomerator_Iterative&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Child class of <a class="el" href="class_agglomerator___isotropic.html" title="Agglomerator_Isotropic class is a child class of the Agglomerator class that specializes the implemen...">Agglomerator_Isotropic</a> which implements a specialized iterative algorithm for the search of fine cells.  <a href="class_agglomerator___iterative.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classcomma_1_1_agglomerator___iterative.html">comma::Agglomerator_Iterative&lt; CoMMAIndexType, CoMMAWeightType, CoMMAIntType &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Child class of <a class="el" href="classcomma_1_1_agglomerator___isotropic.html" title="Agglomerator_Isotropic class is a child class of the Agglomerator class that specializes the implemen...">Agglomerator_Isotropic</a> which implements a specialized iterative algorithm for the search of fine cells.  <a href="classcomma_1_1_agglomerator___iterative.html#details">More...</a><br /></td></tr>
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