CI #14
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name: CI | |
on: | |
push: | |
paths-ignore: | |
- '.gitignore' | |
- 'LICENSE' | |
- 'README.md' | |
pull_request: | |
paths-ignore: | |
- '.gitignore' | |
- 'LICENSE' | |
- 'README.md' | |
schedule: | |
- cron: "0 0 1 */3 *" # Every 3 months | |
workflow_dispatch: | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
ci: | |
runs-on: ubuntu-latest | |
name: run tests (${{ matrix.config.id }} env) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {id: latest, envfile: polyfun.yml} | |
- {id: locked, envfile: polyfun.yml.lock} | |
env: | |
envfile: ${{ matrix.config.envfile }} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Install conda environment | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: ${{ env.envfile }} | |
environment-name: ${{ matrix.config.id }} | |
cache-environment: true | |
cache-environment-key: ${{ matrix.config.id }}-${{ hashFiles(env.envfile) }}-0 | |
# WARNING: FINEMAP is non-commercial software | |
# | |
# Do not blindly copy the code below without first checking your use case | |
# against the license terms. This is not legal advice. Seek professional | |
# help if you need it. Good luck! | |
# | |
# http://christianbenner.com/license_finemap_v1.4.html | |
- name: Install FINEMAP | |
run: | | |
wget http://christianbenner.com/finemap_v1.4.1_x86_64.tgz | |
tar xf finemap_v1.4.1_x86_64.tgz | |
cat finemap_v1.4.1_x86_64/LICENSE | |
- name: Test | |
run: python test_polyfun.py --finemap-exe finemap_v1.4.1_x86_64/finemap_v1.4.1_x86_64 |