[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

omeroweb/webclient/tree.py

@@ -2077,21 +2077,24 @@ def marshal_annotations(
     return annotations, experimenters
 
 
-def marshal_lineage(conn,
-                    project_ids=None,
-                    dataset_ids=None,
-                    image_ids=None,
-                    screen_ids=None,
-                    plate_ids=None,
-                    run_ids=None,
-                    well_ids=None):
-
-    def add_refs(ref_, dataset=None, project=None, well=None,
-                 run=None, plate=None, screen=None):
+def marshal_lineage(
+    conn,
+    project_ids=None,
+    dataset_ids=None,
+    image_ids=None,
+    screen_ids=None,
+    plate_ids=None,
+    run_ids=None,
+    well_ids=None,
+):
+    def add_refs(
+        ref_, dataset=None, project=None, well=None, run=None, plate=None, screen=None
+    ):
         def _add_refs(obj_type, obj_id):
             if obj_id:
                 all_obj_ids[obj_type].add(obj_id)
                 lineage_d[obj_type][obj_id].append(ref_)
+
         _add_refs("DatasetI", dataset)
         _add_refs("ProjectI", project)
         _add_refs("PlateAcquisitionI", run)
@@ -2114,71 +2117,84 @@ def parse_hql_id(hql_ids):
 
     child_ref_d = defaultdict(dict)  # Children references dict
     lineage_d, all_obj_ids = {}, {}  # Result dictionnaries
-    for obj_type in ["ImageI", "DatasetI", "ProjectI", "PlateI",
-                     "PlateAcquisitionI", "WellI", "ScreenI"]:
+    for obj_type in [
+        "ImageI",
+        "DatasetI",
+        "ProjectI",
+        "PlateI",
+        "PlateAcquisitionI",
+        "WellI",
+        "ScreenI",
+    ]:
         lineage_d[obj_type] = defaultdict(list)
         all_obj_ids[obj_type] = set(requested[obj_type])
 
         if len(requested[obj_type]) > 0:
             for o in conn.getObjects(obj_type[:-1], requested[obj_type]):
-                details = {"id": o.getId(),
-                           "class": obj_type}
+                details = {"id": o.getId(), "class": obj_type}
                 if obj_type not in ["PlateAcquisitionI", "WellI"]:
                     details["name"] = o.getName()
                 child_ref_d[obj_type][details["id"]] = details
 
     service_opts = conn.SERVICE_OPTS.copy()
     qs = conn.getQueryService()
-    hql_image = ("select img.id, dset.id, pdl.parent.id, smp.well.id,"
-                 " smp.plateAcquisition.id, plt.id, spl.parent.id"
-                 " from Image img"
-                 " left outer join img.datasetLinks dil"
-                 " left outer join dil.parent dset"
-                 " left outer join img.wellSamples smp"
-                 " left outer join dset.projectLinks pdl"
-                 " left outer join smp.well.plate plt"
-                 " left outer join plt.screenLinks spl"
-                 " where img.id in (:ids)")
-
-    hql_wellrun = ("select child_o.id, plt.id, pdl.parent.id"
-                   " from {} child_o"
-                   " join child_o.plate plt"
-                   " left outer join plt.screenLinks pdl"
-                   " where child_o.id in (:ids)")
-
-    hql_dsetplate = ("select child_o.id, opl.parent.id FROM {} child_o"
-                     " left outer join child_o.{}Links opl "
-                     " where child_o.id in (:ids)")
+    hql_image = (
+        "select img.id, dset.id, pdl.parent.id, smp.well.id,"
+        " smp.plateAcquisition.id, plt.id, spl.parent.id"
+        " from Image img"
+        " left outer join img.datasetLinks dil"
+        " left outer join dil.parent dset"
+        " left outer join img.wellSamples smp"
+        " left outer join dset.projectLinks pdl"
+        " left outer join smp.well.plate plt"
+        " left outer join plt.screenLinks spl"
+        " where img.id in (:ids)"
+    )
+
+    hql_wellrun = (
+        "select child_o.id, plt.id, pdl.parent.id"
+        " from {} child_o"
+        " join child_o.plate plt"
+        " left outer join plt.screenLinks pdl"
+        " where child_o.id in (:ids)"
+    )
+
+    hql_dsetplate = (
+        "select child_o.id, opl.parent.id FROM {} child_o"
+        " left outer join child_o.{}Links opl "
+        " where child_o.id in (:ids)"
+    )
 
     if len(requested["ImageI"]) > 0:
         params = omero.sys.ParametersI()
         params.addIds(requested["ImageI"])
-        for (im, ds, pr,
-             wl, rn, pl, sc) in map(parse_hql_id,
-                                    qs.projection(hql_image,
-                                                  params, service_opts)):
+        for im, ds, pr, wl, rn, pl, sc in map(
+            parse_hql_id, qs.projection(hql_image, params, service_opts)
+        ):
             ref_ = child_ref_d["ImageI"][im]
             add_refs(ref_, ds, pr, wl, rn, pl, sc)
 
     for _type in ["WellI", "PlateAcquisitionI"]:
         if len(requested[_type]) > 0:
             params = omero.sys.ParametersI()
             params.addIds(requested[_type])
-            for ob, pl, sc in map(parse_hql_id,
-                                  qs.projection(hql_wellrun.format(_type[:-1]),
-                                                params, service_opts)):
+            for ob, pl, sc in map(
+                parse_hql_id,
+                qs.projection(hql_wellrun.format(_type[:-1]), params, service_opts),
+            ):
                 ref_ = child_ref_d[_type][ob]
                 add_refs(ref_, plate=pl, screen=sc)
 
-    for _type, parent_type in zip(["PlateI", "DatasetI"],
-                                  ["screen", "project"]):
+    for _type, parent_type in zip(["PlateI", "DatasetI"], ["screen", "project"]):
         if len(requested[_type]) > 0:
             params = omero.sys.ParametersI()
             params.addIds(requested[_type])
-            for ob, p in map(parse_hql_id,
-                             qs.projection(hql_dsetplate.format(_type[:-1],
-                                                                parent_type),
-                                           params, service_opts)):
+            for ob, p in map(
+                parse_hql_id,
+                qs.projection(
+                    hql_dsetplate.format(_type[:-1], parent_type), params, service_opts
+                ),
+            ):
                 ref_ = child_ref_d[_type][ob]
                 if _type == "PlateI":
                     add_refs(ref_, screen=p)