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Remove redundant injections about RO terms. #3380

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Oct 21, 2024
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Remove redundant injections about RO terms. #3380

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25 changes: 6 additions & 19 deletions src/ontology/uberon-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -224717,8 +224717,7 @@ xref: RO:0002220

[Typedef]
id: ambiguous_for_taxon
name: ambiguous_for_taxon
def: "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage." [PHENOSCPAE:asilomar_mtg]
name: ambiguous for taxon
xref: RO:0002173
is_metadata_tag: true
is_class_level: true
Expand Down Expand Up @@ -224955,7 +224954,6 @@ xref: RO:0002285
id: develops_from
name: develops from
xref: RO:0002202
is_a: has_developmental_contribution_from ! has developmental contribution from

[Typedef]
id: develops_from_part_of
Expand Down Expand Up @@ -225039,9 +225037,7 @@ domain: UBERON:0001638 ! vein

[Typedef]
id: dubious_for_taxon
name: dubious_for_taxon
def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [https://orcid.org/0000-0002-6601-2165]
comment: this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost
name: dubious for taxon
xref: RO:0002174
is_metadata_tag: true
is_class_level: true
Expand Down Expand Up @@ -225071,8 +225067,6 @@ is_metadata_tag: true
[Typedef]
id: existence_ends_during
name: existence ends during
def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [https://orcid.org/0000-0002-6601-2165]
synonym: "ceases_to_exist_during" EXACT []
xref: RO:0002492

[Typedef]
Expand Down Expand Up @@ -225222,10 +225216,8 @@ xref: RO:0002372

[Typedef]
id: has_no_connections_with
name: has_no_connections_with
def: "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." [https://orcid.org/0000-0002-6601-2165]
name: has no connections with
xref: RO:0002475
expand_assertion_to: "Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (RO_0002170 some (BFO_0000050 some ?Y))" []
is_metadata_tag: true
is_class_level: true

Expand Down Expand Up @@ -225488,18 +225480,15 @@ xref: RO:0002572

[Typedef]
id: mutually_spatially_disjoint_with
name: mutually_spatially_disjoint_with
name: mutually spatially disjoint with
xref: RO:0002171
expand_assertion_to: "Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)" []
is_metadata_tag: true
is_class_level: true

[Typedef]
id: never_in_taxon
name: never_in_taxon
def: "S never_in_taxon T iff: S SubClassOf in_taxon only not T." [PMID:20973947]
name: never in taxon
xref: RO:0002161
expand_assertion_to: "Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: ?X and (RO_0002162 some ?Y)" []
is_metadata_tag: true
is_class_level: true

Expand Down Expand Up @@ -225593,9 +225582,7 @@ is_metadata_tag: true

[Typedef]
id: present_in_taxon
name: present_in_taxon
def: "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S." [https://orcid.org/0000-0002-6601-2165]
synonym: "applicable for taxon" EXACT []
name: present in taxon
xref: RO:0002175
is_metadata_tag: true
is_class_level: true
Expand Down
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