Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Generate the release diff with the OAK output #3377

Merged
merged 4 commits into from
Nov 12, 2024
Merged

Generate the release diff with the OAK output #3377

Changes from 2 commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
7bbb4f9
Generate the release diff with the OAK output
aleixpuigb Oct 8, 2024
c6ea697
Merge branch 'master' into generate_diff_release
aleixpuigb Oct 8, 2024
824212f
Merge branch 'master' into generate_diff_release_2
gouttegd Nov 9, 2024
036fee0
Move diff_release_oak target to diffs/Makefile.
gouttegd Nov 9, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 10 additions & 0 deletions src/ontology/uberon.Makefile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1407,6 +1407,7 @@ DEPLOY_GH=true
uberon:
$(MAKE) prepare_release IMP=false PAT=false BRI=true CLEANFILES=tmp/merged-uberon-edit.obo
$(MAKE) release-diff
$(MAKE) release_diff_oak
if [ $(DEPLOY_GH) = true ]; then $(MAKE) deploy_release GHVERSION="v$(TODAY)"; fi

FILTER_OUT=../patterns/definitions.owl ../patterns/pattern.owl reports/uberon-edit.obo-obo-report.tsv
Expand All @@ -1422,6 +1423,15 @@ deploy_release:
release-diff:
cd diffs && make all

CURRENT_BASE_RELEASE=$(ONTBASE)/uberon-base.obo

.PHONY: $(TMPDIR)/current-base-release.obo
$(TMPDIR)/current-base-release.obo:
wget $(CURRENT_BASE_RELEASE) -O $@

release_diff_oak:
runoak -i simpleobo:$(TMPDIR)/current-base-release.obo diff -X simpleobo:$(RELEASEDIR)/uberon-base.obo -o $(REPORTDIR)/diff_release_oak.md --output-type md


# ----------------------------------------
# UTILITY COMMANDS
Expand Down
Loading