Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

2972 Obsolete terms for insect anlagen. #3059

Merged
merged 3 commits into from
Sep 12, 2023
Merged

2972 Obsolete terms for insect anlagen. #3059

Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
a88c927
Obsolete terms for insect anlagen.
gouttegd Sep 6, 2023
402e814
Add consider annotation for obsolete insect anlage in statu nascendi.
gouttegd Sep 11, 2023
3ef9e0c
Merge branch 'master' into 2972-obsolete-insect-anlagen
gouttegd Sep 11, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
70 changes: 33 additions & 37 deletions src/ontology/uberon-edit.obo
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -218844,7 +218844,7 @@ name: insect dorsal ectoderm
synonym: "AdorEc" RELATED []
synonym: "dorEc" RELATED []
is_a: UBERON:0010000 ! multicellular anatomical structure
relationship: develops_from UBERON:6005428 ! insect dorsal ectoderm anlage
relationship: develops_from UBERON:6005427 ! insect ectoderm anlage
relationship: part_of UBERON:6007045 ! insect trunk ectoderm

[Term]
Expand All @@ -218863,7 +218863,7 @@ synonym: "AtrunkMes" RELATED []
synonym: "P2 TrMes" RELATED [FBC:DOS]
synonym: "TrMes" RELATED []
is_a: UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:6005436 ! insect trunk mesoderm anlage
relationship: develops_from UBERON:6000104 ! insect mesoderm anlage
relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda

[Term]
Expand Down Expand Up @@ -219103,7 +219103,6 @@ synonym: "optic lobe primordium" RELATED []
synonym: "P2 VisSys" RELATED [FBC:DOS]
is_a: UBERON:0001048 ! primordium
is_a: UBERON:6025991 ! insect anterior ectoderm derivative
relationship: develops_from UBERON:6005434 ! insect visual anlage
relationship: part_of UBERON:0000922 ! embryo

[Term]
Expand Down Expand Up @@ -219902,13 +219901,11 @@ relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion

[Term]
id: UBERON:6004203
name: insect adult clypeo-labral anlage
def: "." [FBC:VH]
synonym: "A AdCly" RELATED [FBC:DOS]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0007688 ! anlage
relationship: develops_from UBERON:6005538 ! insect clypeo-labral primordium
relationship: part_of UBERON:0000922 ! embryo
name: obsolete insect adult clypeo-labral anlage
comment: Obsoleted as this level of precision is deemed unnecessary for Uberon.
property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI
is_obsolete: true
consider: UBERON:6005514

[Term]
id: UBERON:6004296
Expand Down Expand Up @@ -220251,11 +220248,11 @@ relationship: part_of UBERON:0007023 ! adult organism

[Term]
id: UBERON:6005413
name: insect anlage in statu nascendi
def: "'anlagen in statu nascendi' are domains that do not yet coincide 1:1 with a later organ. Anlagen in statu nascendi are typically defined for the early blastoderm by the expression domains of genes which, in the late blastoderm or later, are expressed in specific anlagen, but initially come on in larger domains." [FlyBase:FBrf0178740]
synonym: "A0" RELATED []
is_a: UBERON:0002050 ! embryonic structure
relationship: only_in_taxon NCBITaxon:50557 ! Insecta
name: obsolete insect anlage in statu nascendi
comment: Obsoleted as this level of precision is deemed unnecessary for Uberon.
property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI
is_obsolete: true
consider: UBERON:0007688
gouttegd marked this conversation as resolved.
Show resolved Hide resolved

[Term]
id: UBERON:6005425
Expand All @@ -220271,35 +220268,35 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta

[Term]
id: UBERON:6005428
name: insect dorsal ectoderm anlage
is_a: UBERON:0007688 ! anlage
relationship: part_of UBERON:6005427 ! insect ectoderm anlage
name: obsolete insect dorsal ectoderm anlage
comment: Obsoleted as this level of precision is deemed unnecessary for Uberon.
property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI
is_obsolete: true
consider: UBERON:6005427

[Term]
id: UBERON:6005434
name: insect visual anlage
synonym: "A VisSys" RELATED [FBC:DOS]
synonym: "AVis" RELATED []
is_a: UBERON:0007688 ! anlage
relationship: part_of UBERON:6000119 ! insect anterior ectoderm
name: obsolete insect visual anlage
comment: Obsoleted as this level of precision is deemed unnecessary for Uberon.
property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI
is_obsolete: true
consider: UBERON:6001059

[Term]
id: UBERON:6005436
name: insect trunk mesoderm anlage
synonym: "Asn/A TrMes" RELATED [FBC:DOS]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0007688 ! anlage
relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda
relationship: part_of UBERON:6000104 ! insect mesoderm anlage
name: obsolete insect trunk mesoderm anlage
comment: Obsoleted as this level of precision is deemed unnecessary for Uberon.
property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI
is_obsolete: true
consider: UBERON:6000128

[Term]
id: UBERON:6005439
name: insect clypeo-labral anlage
def: "." [FBC:DOS, FBC:VH]
synonym: "A Cly" RELATED [FBC:DOS]
synonym: "clypeo-labral specific anlage" RELATED []
is_a: UBERON:0007688 ! anlage
relationship: part_of UBERON:6000119 ! insect anterior ectoderm
name: obsolete insect clypeo-labral anlage
comment: Obsoleted as this level of precision is deemed unnecessary for Uberon.
property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI
is_obsolete: true
consider: UBERON:6005538

[Term]
id: UBERON:6005461
Expand All @@ -220324,7 +220321,7 @@ name: insect adult clypeo-labral primordium
synonym: "A AdCly" RELATED [FBC:DOS]
is_a: UBERON:0001048 ! primordium
is_a: UBERON:6001648 ! insect embryonic imaginal precursor
relationship: develops_from UBERON:6004203 ! insect adult clypeo-labral anlage
relationship: develops_from UBERON:6005538 ! insect clypeo-labral primordium
relationship: part_of UBERON:0000323 ! late embryo
relationship: part_of UBERON:0000922 ! embryo

Expand Down Expand Up @@ -220355,7 +220352,6 @@ name: insect clypeo-labral primordium
synonym: "ClyP2" RELATED []
is_a: UBERON:0001048 ! primordium
is_a: UBERON:6025991 ! insect anterior ectoderm derivative
relationship: develops_from UBERON:6005439 ! insect clypeo-labral anlage
relationship: part_of UBERON:0000922 ! embryo

[Term]
Expand Down
Loading