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Update hra_subset component pipeline #2975

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Update hra_subset component pipeline #2975

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ccdb536
update hra_subset component pipeline
anitacaron Jul 18, 2023
f364e29
Merge branch 'master' into update-pipeline-hra-subset
anitacaron Sep 27, 2023
46ead89
Merge branch 'master' into update-pipeline-hra-subset
anitacaron Mar 22, 2024
cb6f019
config hra components in odk yaml
anitacaron Mar 22, 2024
6210c0d
update components
anitacaron Mar 22, 2024
a2217b8
Merge branch 'master' into update-pipeline-hra-subset
anitacaron May 17, 2024
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2 changes: 1 addition & 1 deletion docs/odk-workflows/RepositoryFileStructure.md
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Original file line number Diff line number Diff line change
Expand Up @@ -41,5 +41,5 @@ These are the components in UBERON
| -------- | --- |
| mappings.owl | None |
| in-subset.owl | None |
| hra_subset.owl | None |
| hra_subset.owl | https://raw.githubusercontent.com/hubmapconsortium/ccf-validation-tools/master/owl/UB_ASCTB_subset.owl |
| vasculature_class.owl | None |
10 changes: 10 additions & 0 deletions src/ontology/Makefile
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Expand Up @@ -395,6 +395,16 @@ $(COMPONENTSDIR)/%: | $(COMPONENTSDIR)



.PHONY: component-download-hra_subset.owl
component-download-hra_subset.owl: | $(TMPDIR)
if [ $(MIR) = true ] && [ $(COMP) = true ]; then $(ROBOT) merge -I https://raw.githubusercontent.com/hubmapconsortium/ccf-validation-tools/master/owl/UB_ASCTB_subset.owl \
annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) -o $(TMPDIR)/[email protected]; fi

$(COMPONENTSDIR)/hra_subset.owl: component-download-hra_subset.owl
if [ $(COMP) = true ] ; then if cmp -s $(TMPDIR)/component-download-hra_subset.owl.owl $@ ; then echo "Component identical."; else echo "Component is different, updating." && cp $(TMPDIR)/component-download-hra_subset.owl.owl $@; fi; fi

.PRECIOUS: $(COMPONENTSDIR)/hra_subset.owl

# ----------------------------------------
# Mirroring upstream ontologies
# ----------------------------------------
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