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Add iri-range-advanced QC #2767

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Add iri-range-advanced QC #2767

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2 changes: 1 addition & 1 deletion src/ontology/Makefile
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Expand Up @@ -39,7 +39,7 @@ REPORT_FAIL_ON = ERROR
REPORT_LABEL =
REPORT_PROFILE_OPTS = --profile $(ROBOT_PROFILE)
OBO_FORMAT_OPTIONS =
SPARQL_VALIDATION_CHECKS = equivalent-classes owldef-self-reference illegal-annotation-property taxon-range orcid-contributor obsolete-replaced_by xrefs-mesh-pattern label-synonym-polysemy
SPARQL_VALIDATION_CHECKS = equivalent-classes owldef-self-reference illegal-annotation-property taxon-range orcid-contributor obsolete-replaced_by xrefs-mesh-pattern label-synonym-polysemy iri-range-advanced
SPARQL_EXPORTS = basic-report
ODK_VERSION_MAKEFILE = v1.3.1

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1 change: 1 addition & 0 deletions src/ontology/uberon-odk.yaml
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Expand Up @@ -108,6 +108,7 @@ robot_report:
- obsolete-replaced_by
- xrefs-mesh-pattern
- label-synonym-polysemy
- iri-range-advanced
custom_sparql_exports:
- basic-report
owltools_memory: '20G'
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21 changes: 21 additions & 0 deletions src/sparql/iri-range-advanced-violation.sparql
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@@ -0,0 +1,21 @@
PREFIX never_in_taxon: <http://purl.obolibrary.org/obo/RO_0002161>
PREFIX present_in_taxon: <http://purl.obolibrary.org/obo/RO_0002175>
PREFIX oboInOwl: <http://www.geneontology.org/formats/oboInOwl#>
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>

SELECT ?term ?property ?value
WHERE {
VALUES ?property {
never_in_taxon:
present_in_taxon:
rdfs:seeAlso
foaf:depicted_by
oboInOwl:inSubset
dcterms:contributor }
?term ?property ?value .
FILTER(isIRI(?term) && (STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/UBERON_") || STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/UBERON_") || STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/uberon#") || STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/UBPROP_") || STRSTARTS(str(?term), "http://purl.obolibrary.org/obo/uberon/core#")))
FILTER (!isIRI(?value))
}