Add CHEBI:17292 for PHENIO project

obophenotype · Nov 23, 2024 · 7706676 · 7706676
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diff --git a/chebi_slim.obo b/chebi_slim.obo
@@ -1,13 +1,13 @@
 format-version: 1.2
-data-version: chebi/obophenotype/releases/2024-11-20/chebi_slim.owl
+data-version: chebi/obophenotype/releases/2024-11-23/chebi_slim.owl
 subsetdef: 1_STAR ""
 subsetdef: 2_STAR ""
 subsetdef: 3_STAR ""
 synonymtypedef: BRAND_NAME ""
 synonymtypedef: INN ""
 synonymtypedef: IUPAC_NAME ""
 ontology: chebi/obophenotype/chebi_slim
-property_value: owl:versionInfo "2024-11-20" xsd:string
+property_value: owl:versionInfo "2024-11-23" xsd:string
 
 [Term]
 id: CHEBI:100147
@@ -21641,6 +21641,22 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "31.034" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "31.01839" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/smiles "*CO" xsd:string
 
+[Term]
+id: CHEBI:142626
+name: alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-[alpha-N-acetylneuraminosyl-(2->6)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(2-)
+namespace: chebi_ontology
+subset: 2_STAR
+synonym: "alpha-NeuNAc-(2->3)-beta-D-Gal-(1->3)-[alpha-L-Fuc-(1->4)]-[alpha-NeuNAc-(2->6)]-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(2-)" RELATED [SUBMITTER]
+synonym: "disialyl-Lewis(a) glycolipid(2-)" RELATED [SUBMITTER]
+synonym: "IV(3)NeuNAc, III(6)NeuNAc, III(4)Fuc-Lc4Cer(2-)" RELATED [SUBMITTER]
+synonym: "lacto disialyl-Le(a)" RELATED [UniProt]
+is_a: CHEBI:183224 ! Lacto-series glycosphingolipid
+property_value: http://purl.obolibrary.org/obo/chebi/charge "-2" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/formula "C58H92N4O43R2" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/mass "1533.354" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "1532.51353" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/smiles "O([C@H]1[C@H]([C@@H]([C@H](O)[C@@H](O1)C)O)O)[C@H]2[C@@H]([C@H]([C@H](O[C@@H]3[C@H]([C@H](O[C@@H]4[C@H](O[C@@H](OC[C@@H]([C@@H](*)O)NC(=O)*)[C@@H]([C@H]4O)O)CO)O[C@@H]([C@@H]3O)CO)O)O[C@@H]2CO[C@]5(O[C@]([C@@H]([C@H](C5)O)NC(C)=O)([C@@H]([C@H](O)CO)O)[H])C([O-])=O)NC(C)=O)O[C@@H]6O[C@@H]([C@H](O)[C@@H]([C@H]6O)O[C@]7(O[C@]([C@@H]([C@H](C7)O)NC(C)=O)([C@@H]([C@H](O)CO)O)[H])C([O-])=O)CO" xsd:string
+
 [Term]
 id: CHEBI:142638
 name: nectriapyrones
@@ -86497,6 +86513,46 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "180.15588" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "180.06339" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/smiles "C[C@H](O)[C@@H](O)[C@@H](O)[C@H](O)C(O)=O" xsd:string
 
+[Term]
+id: CHEBI:17292
+name: beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer
+namespace: chebi_ontology
+alt_id: CHEBI:11165
+alt_id: CHEBI:21173
+alt_id: CHEBI:5242
+alt_id: CHEBI:528
+def: "A glycotetraosylceramide having beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucose as the tetrasaccharide component." []
+subset: 3_STAR
+synonym: "(Gal)2 (Glc)1 (GlcNAc)1 (Cer)1" RELATED [KEGG_GLYCAN]
+synonym: "1,3-beta-D-Galactosyl-N-acetyl-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-D-glucosylceramide" RELATED [KEGG_COMPOUND]
+synonym: "a beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(d18:1(4E))" RELATED [UniProt]
+synonym: "beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-Cer" RELATED [ChEBI]
+synonym: "beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide" RELATED [ChEBI]
+synonym: "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1<->1')-Cer" RELATED [ChEBI]
+synonym: "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-Cer" RELATED [ChEBI]
+synonym: "Ceramidetetrasaccharide" RELATED [KEGG_COMPOUND]
+synonym: "lactotetraosyl ceramide" RELATED [ChEBI]
+synonym: "lactotetraosylceramide" RELATED [ChEBI]
+synonym: "Lc4Cer" RELATED [KEGG_COMPOUND]
+synonym: "N-[(2S,3R,4E)-1-[beta-D-galactopyranosyl-(1->3)-2-acetamido-2-deoxy-beta-D-glucopyranosyl-(1->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyloxy]-3-hydroxyoctadec-4-en-2-yl]alkanamide" EXACT IUPAC_NAME [IUPAC]
+synonym: "Paragloboside" RELATED [KEGG_COMPOUND]
+synonym: "paragloboside (beta 1->3)" RELATED [ChEBI]
+xref: KEGG:C04910
+xref: KEGG:G00037
+xref: KEGG:G01469
+xref: PMID:1373469 {source="Europe PMC"}
+xref: PMID:2960671 {source="Europe PMC"}
+xref: PMID:7574700 {source="Europe PMC"}
+xref: PMID:9111138 {source="Europe PMC"}
+is_a: CHEBI:20971 ! D-galactosyl-N-acetyl-D-glucosaminyl-(1->3)-D-galactosyl-(1->4)-D-glucosylceramide
+is_a: CHEBI:90800 ! beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide
+relationship: has_role CHEBI:75771 ! mouse metabolite
+property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/formula "C45H79N2O23R" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/mass "1016.110" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "1015.50736" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/smiles "[C@H]([C@@H](/C=C/CCCCCCCCCCCCC)O)(NC(=O)*)CO[C@@H]1O[C@@H]([C@@H](O[C@H]2[C@@H]([C@@H](O[C@H]3[C@@H]([C@@H](O[C@@H]4O[C@@H]([C@H](O)[C@@H]([C@H]4O)O)CO)[C@H](O)[C@H](O3)CO)NC(C)=O)[C@H]([C@@H](CO)O2)O)O)[C@@H]([C@H]1O)O)CO" xsd:string
+
 [Term]
 id: CHEBI:172923
 name: fluorescein (acid form)
@@ -115558,6 +115614,14 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "129.13386" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "129.05572" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-]C(=O)CCCCC=O" xsd:string
 
+[Term]
+id: CHEBI:183224
+name: Lacto-series glycosphingolipid
+namespace: chebi_ontology
+def: "A series of oligoglycosylceramides having beta-D-galactosyl-(1-3)-N-acetyl-beta-D-glucosaminyl-(1-3)-beta-D-galactosyl-(1-4)-beta-D-glucose as the tetrasaccharide sequence root. The oligosaccharide portion can be elongated in a linear or branched form." []
+subset: 2_STAR
+is_a: CHEBI:24402 ! glycosphingolipid
+
 [Term]
 id: CHEBI:18323
 name: anserine
@@ -125200,6 +125264,13 @@ synonym: "D-galactoside" EXACT [ChEBI]
 synonym: "D-galactosides" RELATED [ChEBI]
 is_a: CHEBI:24163 ! galactoside
 
+[Term]
+id: CHEBI:20971
+name: D-galactosyl-N-acetyl-D-glucosaminyl-(1->3)-D-galactosyl-(1->4)-D-glucosylceramide
+namespace: chebi_ontology
+subset: 1_STAR
+is_a: CHEBI:36507 ! D-galactosyl-N-acetyl-D-glucosaminyl-D-galactosyl-D-glucosylceramide
+
 [Term]
 id: CHEBI:209807
 name: cefoxitin
@@ -218202,6 +218273,13 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "278.524" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "278.29735" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/smiles "C1CC[C@@]2([C@@H](CC[C@@H](CC)C)[C@H](CC[C@@]2([H])C1(C)C)C)C" xsd:string
 
+[Term]
+id: CHEBI:36507
+name: D-galactosyl-N-acetyl-D-glucosaminyl-D-galactosyl-D-glucosylceramide
+namespace: chebi_ontology
+subset: 1_STAR
+is_a: CHEBI:23075 ! glycotetraosylceramide
+
 [Term]
 id: CHEBI:36508
 name: glycotriaosylceramide
@@ -299258,8 +299336,8 @@ namespace: chebi_ontology
 def: "Conjugate base of dolichyl D-xylosyl phosphate; major species at pH 7.3." []
 subset: 3_STAR
 synonym: "alpha-(3-methylbut-2-en-1-yl)-omega-{4-[(D-xylopyranosyloxy)(hydroxy)(phosphinato)oxy]-2-methylbutyl}poly[(2E)-2-methylbut-2-ene-1,4-diyl]" EXACT IUPAC_NAME [IUPAC]
-synonym: "dolichyl D-xylosyl phosphate" RELATED [UniProt]
 synonym: "dolichyl D-xylosyl phosphate" RELATED [ChEBI]
+synonym: "dolichyl D-xylosyl phosphate" RELATED [UniProt]
 synonym: "dolichyl D-xylosyl phosphate anion" RELATED [ChEBI]
 is_a: CHEBI:58945 ! organophosphate oxoanion
 relationship: is_conjugate_base_of CHEBI:17298 ! dolichyl D-xylosyl phosphate
@@ -323172,8 +323250,8 @@ name: icosapentaenoate
 namespace: chebi_ontology
 def: "A C20, straight-chain, polyunsaturated fatty acid anion containing five double bonds." []
 subset: 3_STAR
-synonym: "eicosapentaenoate" RELATED [UniProt]
 synonym: "eicosapentaenoate" RELATED [ChEBI]
+synonym: "eicosapentaenoate" RELATED [UniProt]
 is_a: CHEBI:57560 ! long-chain fatty acid anion
 is_a: CHEBI:58954 ! straight-chain saturated fatty acid anion
 is_a: CHEBI:76567 ! polyunsaturated fatty acid anion
@@ -406868,6 +406946,25 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "130.102" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "130.03784" xsd:string
 property_value: http://purl.obolibrary.org/obo/chebi/smiles "[NH3+]C(C(NC(C([O-])=O)*)=O)*" xsd:string
 
+[Term]
+id: CHEBI:90800
+name: beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide
+namespace: chebi_ontology
+def: "A glycotetraosylceramide having beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl component attached to the primary hydroxy function of a ceramide with undefined sphingoid base." []
+subset: 3_STAR
+synonym: "beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer" RELATED [ChEBI]
+synonym: "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1<->1')-Cer" RELATED [ChEBI]
+synonym: "Lc4Cer" RELATED [UniProt]
+xref: PMID:11368156 {source="SUBMITTER"}
+is_a: CHEBI:183224 ! Lacto-series glycosphingolipid
+is_a: CHEBI:23075 ! glycotetraosylceramide
+relationship: has_functional_parent CHEBI:142626 ! alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-[alpha-N-acetylneuraminosyl-(2->6)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(2-)
+property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/formula "C30H50N2O23R2" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/mass "806.719" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "806.28044" xsd:string
+property_value: http://purl.obolibrary.org/obo/chebi/smiles "[C@H]1(O[C@@H]([C@H](O)[C@@H]([C@H]1O)O)CO)O[C@@H]2[C@H]([C@H](O[C@@H]3[C@H]([C@H](O[C@@H]4[C@H](O[C@@H](OC[C@@H]([C@@H](*)O)NC(=O)*)[C@@H]([C@H]4O)O)CO)O[C@@H]([C@@H]3O)CO)O)O[C@H](CO)[C@H]2O)NC(C)=O" xsd:string
+
 [Term]
 id: CHEBI:90821
 name: 15-HPETE(1-)