Skip to content

Commit

Permalink
Merge pull request #290 from obophenotype/issue276
Browse files Browse the repository at this point in the history 
Add trait terms mapped to EFO measurement classes
  • Loading branch information
@rays22
rays22 authored Sep 11, 2023
2 parents 4bbb15d + 673c8f0 commit 6f498ea
Show file tree
Hide file tree
Showing 6 changed files with 385 additions and 7 deletions.
172 changes: 170 additions & 2 deletions src/ontology/imports/merged_import.owl
View file

Large diffs are not rendered by default.

1 change: 1 addition & 0 deletions src/patterns/data/default/chemical_role_attribute_location.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -7,3 +7,4 @@ OBA:VT0010269 colostrum hormone amount CHEBI:24621 hormone PATO:0000070 amount U
OBA:VT0010275 milk hormone amount CHEBI:24621 hormone PATO:0000070 amount UBERON:0001913 milk
OBA:2050092 serum metabolite amount CHEBI:25212 metabolite PATO:0000070 amount UBERON:0001977 serum
OBA:2050078 blood metabolite amount CHEBI:25212 metabolite PATO:0000070 amount UBERON:0000178 blood
OBA:2045211 nutrient level in blood CHEBI:33284 nutrient PATO:0000070 amount UBERON:0000178 blood
16 changes: 16 additions & 0 deletions src/patterns/data/default/entity_attribute.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4255,3 +4255,19 @@ OBA:2050201 seminal fluid amount UBERON:0006530 seminal fluid PATO:0000070 amoun
OBA:2050202 skin amplitude trait UBERON:0000014 zone of skin PATO:0000080 amplitude
OBA:2050203 skin fluorescence trait UBERON:0000014 zone of skin PATO:0000018 fluorescence
OBA:2050204 spleen volume UBERON:0002106 spleen PATO:0000918 volume
OBA:2045208 carotid artery morphology UBERON:0001530 common carotid artery plus branches PATO:0000051 morphology carotid artery geometry attribute https://orcid.org/0000-0001-8314-2140
OBA:2045210 brain attribute UBERON:0000955 brain PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045212 Lewy body attribute GO:0097413 Lewy body PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045213 carotid artery attribute UBERON:0001530 common carotid artery plus branches PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045214 cingulate cortex attribute UBERON:0003027 cingulate cortex PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045215 menstrual cycle attribute GO:0044850 menstrual cycle PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045216 macula attribute UBERON:0000054 macula PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045217 putamen attribute UBERON:0001874 putamen PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045218 parietal cortex attribute UBERON:0016530 parietal cortex PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045219 corneal endothelial cell attribute CL:0000132 corneal endothelial cell PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045220 immunoglobulin isotype switching attribute GO:0045190 isotype switching PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045221 bowel opening frequency GO:0035882 defecation rhythm PATO:0000044 frequency https://orcid.org/0000-0001-8314-2140
OBA:2045222 basophilic erythroblast count CL:0000549 basophilic erythroblast PATO:0000070 amount prorubricyte count https://orcid.org/0000-0001-8314-2140
OBA:2045223 myeloid leukocyte count CL:0000766 myeloid leukocyte PATO:0000070 amount myeloid white cell count https://orcid.org/0000-0001-8314-2140
OBA:2045224 visceral adipose tissue quantity UBERON:0035818 visceral fat PATO:0000070 amount https://orcid.org/0000-0001-8314-2140
OBA:2045225 blood clotting level UBERON:0010210 blood clot PATO:0000070 amount thrombus formation level https://orcid.org/0000-0001-8314-2140
1 change: 1 addition & 0 deletions src/patterns/data/default/entity_attribute_location.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -5342,3 +5342,4 @@ OBA:2050336 level of T-cell differentiation antigen CD6 in blood plasma PR:P3020
OBA:2050337 level of eukaryotic translation initiation factor 4E-binding protein 1 in blood plasma PR:000006994 eukaryotic translation initiation factor 4E-binding protein 1 PATO:0000070 amount UBERON:0001969 blood plasma
OBA:2045206 level of serum globulin type protein CHEBI:166899 globulin type PATO:0000070 amount UBERON:0001977 serum level of serum non-albumin protein|serum non-albumin protein amount https://orcid.org/0000-0001-8314-2140
OBA:2045207 level of serum albumin type protein CHEBI:166964 albumin type PATO:0000070 amount UBERON:0001977 serum level of serum albumin type protein|serum albumin type protein amount https://orcid.org/0000-0001-8314-2140
OBA:2045209 level of taurine in blood serum CHEBI:15891 taurine PATO:0000070 amount UBERON:0001977 serum https://orcid.org/0000-0001-8314-2140
2 changes: 1 addition & 1 deletion src/patterns/data/default/entity_attribute_part_of.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2774,7 +2774,7 @@ OBA:1000517 UBERON:0005438 coronary sinus PATO:0000001 quality
OBA:1000518 UBERON:0000007 pituitary gland PATO:0000001 quality
OBA:1000519 GO:0006560 proline metabolic process PATO:0000001 quality
OBA:1000520 UBERON:0000210 tetrapod parietal bone PATO:0000001 quality
OBA:1000521 UBERON:0000079 male reproductive system PATO:0000001 quality
OBA:1000521 male reproductive system attribute UBERON:0000079 male reproductive system PATO:0000001 quality
OBA:1000522 GO:0006563 L-serine metabolic process PATO:0000001 quality
OBA:1000523 UBERON:0001174 common bile duct PATO:0000001 quality
OBA:1000524 UBERON:0004087 vena cava PATO:0000001 quality
Expand Down
Loading

0 comments on commit 6f498ea

Please sign in to comment.