Merge pull request #282 from obophenotype/add_sputum_amount_terms_GWAS

Add sputum amount terms gwas

src/ontology/components/obsoletes.owl

@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/oba/components/obsoletes.owl>
-<http://purl.obolibrary.org/obo/oba/releases/2023-08-10/components/obsoletes.owl>
-Annotation(owl:versionInfo "2023-08-10")
+<http://purl.obolibrary.org/obo/oba/releases/2023-08-15/components/obsoletes.owl>
+Annotation(owl:versionInfo "2023-08-15")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0000037>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0000039>))

src/ontology/components/synonyms.owl

@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/oba/components/synonyms.owl>
-<http://purl.obolibrary.org/obo/oba/releases/2023-08-10/components/synonyms.owl>
-Annotation(owl:versionInfo "2023-08-10")
+<http://purl.obolibrary.org/obo/oba/releases/2023-08-15/components/synonyms.owl>
+Annotation(owl:versionInfo "2023-08-15")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0002546>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0002565>))

src/ontology/imports/merged_import.owl

@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/oba/imports/merged_import.owl>
-<http://purl.obolibrary.org/obo/oba/releases/2023-08-14/imports/merged_import.owl>
-Annotation(owl:versionInfo "2023-08-14")
+<http://purl.obolibrary.org/obo/oba/releases/2023-08-15/imports/merged_import.owl>
+Annotation(owl:versionInfo "2023-08-15")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
@@ -27309,6 +27309,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PR_000010749>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000010752>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000010756>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000010761>))
+Declaration(Class(<http://purl.obolibrary.org/obo/PR_000010769>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000010772>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000010775>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000010777>))
@@ -30847,6 +30848,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PR_000031307>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000031314>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000031329>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000031337>))
+Declaration(Class(<http://purl.obolibrary.org/obo/PR_000031343>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000031354>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000031355>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000031359>))
@@ -35758,6 +35760,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PR_P98066>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_P98077>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_P98078>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_P98082>))
+Declaration(Class(<http://purl.obolibrary.org/obo/PR_P98088>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_P98153>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_P98155>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_P98156>))
@@ -40718,6 +40721,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PR_Q9HC23>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_Q9HC56>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_Q9HC57>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_Q9HC62>))
+Declaration(Class(<http://purl.obolibrary.org/obo/PR_Q9HC84>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_Q9HCB6>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_Q9HCE7>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_Q9HCH5>))
@@ -49762,7 +49766,7 @@ SubObjectPropertyOf(<http://purl.obolibrary.org/obo/GOREL_0002004> <http://purl.
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MONDO_0100332> "disease has primary infectious agent")
 SubObjectPropertyOf(<http://purl.obolibrary.org/obo/MONDO_0100332> <http://purl.obolibrary.org/obo/RO_0014001>)
 
-# Object Property: <http://purl.obolibrary.org/obo/RO_0000052> (inheres in)
+# Object Property: <http://purl.obolibrary.org/obo/RO_0000052> (characteristic of)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000111> <http://purl.obolibrary.org/obo/RO_0000052> "inheres in"@en)
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/RO_0000052> "this fragility is a characteristic of this vase"@en)
@@ -51055,7 +51059,7 @@ AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/RO_0002305> <ht
 SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002305> <http://purl.obolibrary.org/obo/RO_0002411>)
 SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002305> <http://purl.obolibrary.org/obo/RO_0004046>)
 
-# Object Property: <http://purl.obolibrary.org/obo/RO_0002314> (characteristic of part of)
+# Object Property: <http://purl.obolibrary.org/obo/RO_0002314> (inheres in part of)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0002314> "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.")
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/RO_0002314> "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of")
@@ -266113,6 +266117,13 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PR_000010761> "mu
 AnnotationAssertion(<https://w3id.org/semapv/vocab/crossSpeciesExactMatch> <http://purl.obolibrary.org/obo/PR_000010761> <http://purl.obolibrary.org/obo/PR_Q8WXI7>)
 SubClassOf(<http://purl.obolibrary.org/obo/PR_000010761> <http://purl.obolibrary.org/obo/PR_000000001>)
 
+# Class: <http://purl.obolibrary.org/obo/PR_000010769> (mucin-5B)
+
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/PR_000010769> "Category=gene.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PR_000010769> "mucin-5B")
+AnnotationAssertion(<https://w3id.org/semapv/vocab/crossSpeciesExactMatch> <http://purl.obolibrary.org/obo/PR_000010769> <http://purl.obolibrary.org/obo/PR_Q9HC84>)
+SubClassOf(<http://purl.obolibrary.org/obo/PR_000010769> <http://purl.obolibrary.org/obo/PR_000000001>)
+
 # Class: <http://purl.obolibrary.org/obo/PR_000010772> (mucin-like protein 1)
 
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/PR_000010772> "Category=gene.")
@@ -292387,6 +292398,13 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PR_000031337> "en
 AnnotationAssertion(<https://w3id.org/semapv/vocab/crossSpeciesExactMatch> <http://purl.obolibrary.org/obo/PR_000031337> <http://purl.obolibrary.org/obo/PR_B6SEH8>)
 SubClassOf(<http://purl.obolibrary.org/obo/PR_000031337> <http://purl.obolibrary.org/obo/PR_000000001>)
 
+# Class: <http://purl.obolibrary.org/obo/PR_000031343> (mucin-5AC)
+
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/PR_000031343> "Category=gene.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PR_000031343> "mucin-5AC")
+AnnotationAssertion(<https://w3id.org/semapv/vocab/crossSpeciesExactMatch> <http://purl.obolibrary.org/obo/PR_000031343> <http://purl.obolibrary.org/obo/PR_P98088>)
+SubClassOf(<http://purl.obolibrary.org/obo/PR_000031343> <http://purl.obolibrary.org/obo/PR_000000001>)
+
 # Class: <http://purl.obolibrary.org/obo/PR_000031354> (WW domain binding protein 1-like)
 
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/PR_000031354> "Category=gene.")
@@ -336056,6 +336074,15 @@ SubClassOf(<http://purl.obolibrary.org/obo/PR_P98082> <http://purl.obolibrary.or
 SubClassOf(<http://purl.obolibrary.org/obo/PR_P98082> <http://purl.obolibrary.org/obo/PR_000029067>)
 SubClassOf(<http://purl.obolibrary.org/obo/PR_P98082> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_9606>))
 
+# Class: <http://purl.obolibrary.org/obo/PR_P98088> (mucin-5AC (human))
+
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/PR_P98088> "Category=organism-gene.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PR_P98088> "mucin-5AC (human)")
+EquivalentClasses(<http://purl.obolibrary.org/obo/PR_P98088> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000031343> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_9606>)))
+SubClassOf(<http://purl.obolibrary.org/obo/PR_P98088> <http://purl.obolibrary.org/obo/PR_000029067>)
+SubClassOf(<http://purl.obolibrary.org/obo/PR_P98088> <http://purl.obolibrary.org/obo/PR_000031343>)
+SubClassOf(<http://purl.obolibrary.org/obo/PR_P98088> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_9606>))
+
 # Class: <http://purl.obolibrary.org/obo/PR_P98153> (integral membrane protein DGCR2/IDD (human))
 
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/PR_P98153> "Category=organism-gene.")
@@ -380661,6 +380688,15 @@ SubClassOf(<http://purl.obolibrary.org/obo/PR_Q9HC62> <http://purl.obolibrary.or
 SubClassOf(<http://purl.obolibrary.org/obo/PR_Q9HC62> <http://purl.obolibrary.org/obo/PR_000029067>)
 SubClassOf(<http://purl.obolibrary.org/obo/PR_Q9HC62> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_9606>))
 
+# Class: <http://purl.obolibrary.org/obo/PR_Q9HC84> (mucin-5B (human))
+
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/PR_Q9HC84> "Category=organism-gene.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PR_Q9HC84> "mucin-5B (human)")
+EquivalentClasses(<http://purl.obolibrary.org/obo/PR_Q9HC84> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000010769> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_9606>)))
+SubClassOf(<http://purl.obolibrary.org/obo/PR_Q9HC84> <http://purl.obolibrary.org/obo/PR_000010769>)
+SubClassOf(<http://purl.obolibrary.org/obo/PR_Q9HC84> <http://purl.obolibrary.org/obo/PR_000029067>)
+SubClassOf(<http://purl.obolibrary.org/obo/PR_Q9HC84> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_9606>))
+
 # Class: <http://purl.obolibrary.org/obo/PR_Q9HCB6> (spondin-1 (human))
 
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/PR_Q9HCB6> "Category=organism-gene.")