Redirect references to IAO:measurement datum to COB:measurement datum

obi-ontology · Aug 20, 2024 · 2a894e5 · 2a894e5
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commit 2a894e5
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diff --git a/src/ontology/OntoFox_inputs/IAO_input.txt b/src/ontology/OntoFox_inputs/IAO_input.txt
@@ -32,7 +32,6 @@ http://purl.obolibrary.org/obo/IAO_0000098 # data format specification
 http://purl.obolibrary.org/obo/IAO_0000100 # data set
 http://purl.obolibrary.org/obo/IAO_0000101 # image
 http://purl.obolibrary.org/obo/IAO_0000104 # plan specification
-http://purl.obolibrary.org/obo/IAO_0000109 # measurement datum
 http://purl.obolibrary.org/obo/IAO_0000136 # is about
 http://purl.obolibrary.org/obo/IAO_0000144 # conclusion textual entity
 http://purl.obolibrary.org/obo/IAO_0000178 # material information bearer

diff --git a/src/ontology/OntoFox_outputs/IAO_imports.owl b/src/ontology/OntoFox_outputs/IAO_imports.owl
@@ -342,7 +342,7 @@ interpreted by or directly executed by a processing unit.</obo:IAO_0000115>
     <!-- http://purl.obolibrary.org/obo/IAO_0000032 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000032">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
         <obo:IAO_0000111 xml:lang="en">scalar measurement datum</obo:IAO_0000111>
         <obo:IAO_0000115 xml:lang="en">A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.</obo:IAO_0000115>
         <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
@@ -496,18 +496,6 @@ Example: The ISO document specifying what encompasses an XML document; The instr
 
 
 
-    <!-- http://purl.obolibrary.org/obo/IAO_0000109 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000109">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
-        <obo:IAO_0000111 xml:lang="en">measurement datum</obo:IAO_0000111>
-        <obo:IAO_0000115 xml:lang="en">A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.</obo:IAO_0000115>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
-        <rdfs:label xml:lang="en">measurement datum</rdfs:label>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/IAO_0000144 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000144">

diff --git a/src/ontology/modules/assays.owl b/src/ontology/modules/assays.owl
@@ -878,6 +878,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/COB_0000121 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000121"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/GO_0000785 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0000785"/>
@@ -1262,12 +1268,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/IAO_0000109 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/IAO_0000414 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000414"/>
@@ -1824,7 +1824,7 @@
                     </owl:Restriction>
                     <owl:Restriction>
                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
                     </owl:Restriction>
                     <owl:Restriction>
                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
@@ -2013,7 +2013,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -2045,7 +2045,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -2309,7 +2309,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -3554,7 +3554,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -3666,7 +3666,7 @@
                 <owl:someValuesFrom>
                     <owl:Class>
                         <owl:intersectionOf rdf:parseType="Collection">
-                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/COB_0000121"/>
                             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001573"/>
                         </owl:intersectionOf>
                     </owl:Class>
@@ -4120,7 +4120,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <obo:IAO_0000112>The level of actin mRNA levels in normal and diseased tiisue was measured using a northern blot assay.</obo:IAO_0000112>
@@ -4219,7 +4219,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <obo:IAO_0000112>Determining the viral titer of a virus infected human by measuring the presence of hemagglutination when dilutions of serum samples are added to a known quantity of red blood cells.</obo:IAO_0000112>
@@ -4661,7 +4661,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -4737,7 +4737,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -5205,7 +5205,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -5556,7 +5556,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -5594,7 +5594,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -5645,7 +5645,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -5769,7 +5769,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -5864,7 +5864,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -6062,7 +6062,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -6191,7 +6191,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -6326,7 +6326,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -6470,7 +6470,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -6509,7 +6509,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -6554,7 +6554,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -6769,7 +6769,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -6806,7 +6806,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -10732,7 +10732,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -10855,7 +10855,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -13805,7 +13805,7 @@
                 <owl:someValuesFrom>
                     <owl:Class>
                         <owl:intersectionOf rdf:parseType="Collection">
-                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/COB_0000121"/>
                             <owl:Restriction>
                                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0001938"/>
                                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002138"/>
@@ -13835,7 +13835,7 @@
                 <owl:someValuesFrom>
                     <owl:Class>
                         <owl:intersectionOf rdf:parseType="Collection">
-                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/COB_0000121"/>
                             <owl:Restriction>
                                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0001938"/>
                                 <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0002139"/>
@@ -21219,7 +21219,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -26903,7 +26903,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <rdfs:subClassOf>
@@ -27034,7 +27034,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <obo:IAO_0000112>the detection of phycoerytherin by means of flow cytometry</obo:IAO_0000112>
@@ -27349,7 +27349,7 @@
                         <owl:someValuesFrom>
                             <owl:Class>
                                 <owl:intersectionOf rdf:parseType="Collection">
-                                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
+                                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/COB_0000121"/>
                                     <owl:Restriction>
                                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
                                         <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GO_0032609"/>

diff --git a/src/ontology/modules/medical-history.owl b/src/ontology/modules/medical-history.owl
@@ -69,15 +69,15 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/IAO_0000030 -->
+    <!-- http://purl.obolibrary.org/obo/COB_0000121 -->
 
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030"/>
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000121"/>
 
 
 
-    <!-- http://purl.obolibrary.org/obo/IAO_0000109 -->
+    <!-- http://purl.obolibrary.org/obo/IAO_0000030 -->
 
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030"/>
 
 
 
@@ -437,7 +437,7 @@
     <!-- http://purl.obolibrary.org/obo/OBI_0002394 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002394">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
         <obo:IAO_0000115 xml:lang="en">A measurement datum of the total number of pregnancies a woman has had.</obo:IAO_0000115>
         <obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
         <obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>
@@ -450,7 +450,7 @@
     <!-- http://purl.obolibrary.org/obo/OBI_0002395 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002395">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
         <obo:IAO_0000115 xml:lang="en">A measurement datum of the total number of live births a female has had.</obo:IAO_0000115>
         <obo:IAO_0000117>Chris Stoeckert, Helena Ellis</obo:IAO_0000117>
         <obo:IAO_0000119>NCI BBRB, OBIB</obo:IAO_0000119>