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Merge pull request #1804 from obi-ontology/1802_NovaSeqX
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Add Illumina NovaSeq X & X Plus
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@jamesaoverton
jamesaoverton authored Aug 26, 2024
2 parents 4f6585f + 01e0b58 commit 0da1d20
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46 changes: 46 additions & 0 deletions src/ontology/modules/devices.owl
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<!-- http://purl.obolibrary.org/obo/OBI_0003663 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003663">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0400103"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000304"/>
<owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/OBI_0000759"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>Illumina NovaSeq X</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A DNA sequencer with three flow cell types manufactured by Illumina. The NovaSeq X provides an output of up to 8 Tb (26-52 billion reads per run). The sequencer utilizes XLEAP-SBS chemistry, an advanced version of Illumina&apos;s sequencing by synthesis (SBS) technology, which enables faster and more accurate sequencing.</obo:IAO_0000115>
<obo:IAO_0000117>Morgana Barroso Oquendo</obo:IAO_0000117>
<obo:IAO_0000118>NovaSeq X Series</obo:IAO_0000118>
<obo:IAO_0000118>NovaSeq X System</obo:IAO_0000118>
<obo:IAO_0000119>https://emea.illumina.com/systems/sequencing-platforms/novaseq-x-plus.html</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1802</obo:IAO_0000233>
<obo:IAO_0000234>Morgana Barroso Oquendo</obo:IAO_0000234>
<rdfs:label>Illumina NovaSeq X</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0003664 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003664">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0400103"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000304"/>
<owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/OBI_0000759"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000111>Illumina NovaSeq X Plus</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A DNA sequencer with three flow cell types manufactured by Illumina. It features a dual-flow cell configuration, allowing to reach an output of up to 16 Tb (52-104 billion reads per run). The sequencer utilizes XLEAP-SBS chemistry, an advanced version of Illumina&apos;s sequencing by synthesis (SBS) technology, which enables faster and more accurate sequencing.</obo:IAO_0000115>
<obo:IAO_0000117>Morgana Barroso Oquendo</obo:IAO_0000117>
<obo:IAO_0000118>NovaSeq X Series</obo:IAO_0000118>
<obo:IAO_0000118>NovaSeq X System</obo:IAO_0000118>
<obo:IAO_0000119>https://emea.illumina.com/systems/sequencing-platforms/novaseq-x-plus.html</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1802</obo:IAO_0000233>
<obo:IAO_0000234>Morgana Barroso Oquendo</obo:IAO_0000234>
<rdfs:label>Illumina NovaSeq X Plus</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0302886 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0302886"/>
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2 changes: 2 additions & 0 deletions src/ontology/templates/devices.tsv
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Expand Up @@ -469,6 +469,8 @@ OBI:0003550 odor baited CDC light trap human odour baited light trap A CDC lig
OBI:0003551 resting clay pot trap resting clay pot catch A resting arthropod trap that consists of a container composed primarily of clay. John Judkins ORCID:0000-0001-6595-0902 https://github.com/obi-ontology/obi/issues/1651 resting arthropod trap
OBI:0003606 Illumina NextSeq 1000 NextSeq 1000 A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and uses P1 and P2 flow cells. https://www.illumina.com/systems/sequencing-platforms/nextseq-1000-2000.html Sebastian Duesing GENEPIO https://github.com/obi-ontology/obi/issues/1711 subclass DNA sequencer Illumina
OBI:0003650 Illumina Infinium MethylationEPIC v2.0 BeadChip Illumina Infinium MethylationEPIC v2.0 BeadChip An Illumina methylation BeadChip that targets 935,000 methylation sites per sample at single-nucleotide resolution. https://www.illumina.com/products/by-type/microarray-kits/infinium-methylation-epic.html Sebastian Duesing https://github.com/obi-ontology/obi/issues/1665 Illumina methylation BeadChip
OBI:0003663 Illumina NovaSeq X Illumina NovaSeq X NovaSeq X System|NovaSeq X Series A DNA sequencer with three flow cell types manufactured by Illumina. The NovaSeq X provides an output of up to 8 Tb (26-52 billion reads per run). The sequencer utilizes XLEAP-SBS chemistry, an advanced version of Illumina's sequencing by synthesis (SBS) technology, which enables faster and more accurate sequencing. https://emea.illumina.com/systems/sequencing-platforms/novaseq-x-plus.html Morgana Barroso Oquendo Morgana Barroso Oquendo https://github.com/obi-ontology/obi/issues/1802 subclass DNA sequencer Illumina
OBI:0003664 Illumina NovaSeq X Plus Illumina NovaSeq X Plus NovaSeq X System|NovaSeq X Series A DNA sequencer with three flow cell types manufactured by Illumina. It features a dual-flow cell configuration, allowing to reach an output of up to 16 Tb (52-104 billion reads per run). The sequencer utilizes XLEAP-SBS chemistry, an advanced version of Illumina's sequencing by synthesis (SBS) technology, which enables faster and more accurate sequencing. https://emea.illumina.com/systems/sequencing-platforms/novaseq-x-plus.html Morgana Barroso Oquendo Morgana Barroso Oquendo https://github.com/obi-ontology/obi/issues/1802 subclass DNA sequencer Illumina
OBI:0400005 A10-Analyzer A10-Analyzer ready for release A A10 is a flow_cytometer_analyser manufactured by Apogee. It uses an arc lamp as a light source, with choices of 75W Xe, 75W Xe/Hg or 100W Hg arc lamps. It has filters and collectors for up to three fluorescent parameters and two scatter parameters. It uses analog electronics. The A10 can be used for measuring the properties of individual cells. http://www.apogeeflow.com/flow_cytometry_products.htm John Quinn flow cytometer analyzer
OBI:0400006 A40-MiniFCM A40-MiniFCM ready for release A A40-MiniFCM is a flow_cytometer_analyser that allows for the choice of one of four lasers (375nm, 405nm,488nm, 532nm, 635nm), and PMTs and filters for collecting up to four parameters. It uses digital electronics. A military version of this cytometer is available as well. The A40-MiniFCM is geared towards the most demanding applications such as archaea, bacteria and large virus. http://www.apogeeflow.com/flow_cytometry_products.htm John Quinn flow cytometer analyzer
OBI:0400007 analog-to-digital converter analog-to-digital converter metadata incomplete A2D|A-D An analog-to-digital_converter is an instrument that converts an infinite resolution analog signal to a finite resolution digital signal. http://en.wiktionary.org/wiki/Analog-to-Digital_Converter The analog to digital converter transformed the analog output from the photomultiplier tube to a digital signal for collection. John Quinn|Melanie Courtot device signal conversion function
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