Fix certificate symlink handling

In response to the identified flaws in the originally delivered fix, for
feature enabling http repositories, this commit addresses the following
issues:

1. Previously, files installed via RPMs that were originally symlinks
   were being switched to standard files. This issue has been resolved
   by preserving symlinks within the /etc/pki directory. Any symlink
   pointing to a file within the /etc/pki directory (whether present in
   the source system or installed by a package in the container) will be
   present in the container, ensuring changes to certificates are
   properly propagated.

2. Lists of trusted CAs were not being updated, as the update-ca-trust
   call was missing inside the container. This commit now includes the
   necessary update-ca-trust call.

The solution specification has been modified as follows:

    - Certificate _files_ in /etc/pki (excluding symlinks) are copied to
      the container as in the original solution.
    - Files installed by packages within the container are preserved and
      given higher priority.
    - Handling of symlinks is enhanced, ensuring that symlinks within
      the /etc/pki directory are preserved, while any symlink pointing
      outside the /etc/pki directory will be copied as a file.
    - Certificates are updated using `update-ca-trust`.

repos/system_upgrade/common/actors/targetuserspacecreator/libraries/userspacegen.py

@@ -345,6 +345,53 @@ def _get_files_owned_by_rpms(context, dirpath, pkgs=None, recursive=False):
     return files_owned_by_rpms
 
 
+def _copy_decouple(srcdir, dstdir):
+    for root, _, files in os.walk(srcdir):
+        for filename in files:
+            relpath = os.path.relpath(root, srcdir)
+            source_filepath = os.path.join(root, filename)
+            target_filepath = os.path.join(dstdir, relpath, filename)
+
+            # Skip and report broken symlinks (this follows any possible chain of symlinks)
+            if not os.path.exists(source_filepath):
+                api.current_logger().warning('File {} is a broken symlink!'.format(source_filepath))
+                continue
+
+            # Copy symlinks to the target userspace
+            pointee = None
+            if os.path.islink(source_filepath):
+                pointee = os.readlink(source_filepath)
+
+            # If source file is a symlink within `src` then preserve it,
+            # otherwise resolve and copy it as a file it points to
+            if pointee is not None and not pointee.startswith(srcdir):
+                # Follow the path until we hit a file or get back to /etc/pki
+                while not pointee.startswith(srcdir) and os.path.islink(pointee):
+                    pointee = os.readlink(pointee)
+
+                # Pointee points to a file outside /etc/pki so we copy it instead
+                if not pointee.startswith(srcdir) and not os.path.islink(pointee):
+                    source_filepath = pointee
+                else:
+                    # pointee points back to /etc/pki
+                    pass
+
+            # Ensure parent directory exists
+            parent_dir = os.path.dirname(target_filepath)
+            if not os.path.exists(parent_dir):
+                os.makedirs(parent_dir, exist_ok=True)
+
+            if os.path.islink(source_filepath):
+                # Translate pointee to target /etc/pki
+                target_pointee = os.path.join(dstdir, os.path.relpath(pointee, root))
+                # TODO(dkubek): Preserve the owner and permissions of the original symlink
+                run(['ln', '-s', target_pointee, target_filepath])
+                run(['chmod' '--reference={}'.format(source_filepath), target_filepath])
+                continue
+
+            run(['cp', '-a', source_filepath, target_filepath])
+
+
 def _copy_certificates(context, target_userspace):
     """
     Copy the needed certificates into the container, but preserve original ones
@@ -360,36 +407,51 @@ def _copy_certificates(context, target_userspace):
         files_owned_by_rpms = _get_files_owned_by_rpms(target_context, '/etc/pki', recursive=True)
         api.current_logger().debug('Files owned by rpms: {}'.format(' '.join(files_owned_by_rpms)))
 
+    # Backup container /etc/pki
     run(['mv', target_pki, backup_pki])
-    context.copytree_from('/etc/pki', target_pki)
 
+    # Copy source /etc/pki to the container
+    _copy_decouple('/etc/pki', target_pki)
+
+    # Assertion: If skip_broken_symlinks is True
+    #   => no broken symlinks exist in /etc/pki
+    # So any new broken symlinks created will be by the installed packages.
+
+    # Recover installed packages as they always get precedence
     for filepath in files_owned_by_rpms:
         src_path = os.path.join(backup_pki, filepath)
         dst_path = os.path.join(target_pki, filepath)
 
         # Resolve and skip any broken symlinks
         is_broken_symlink = False
-        while os.path.islink(src_path):
-            # The symlink points to a path relative to the target userspace so
-            # we need to readjust it
-            next_path = os.path.join(target_userspace, os.readlink(src_path)[1:])
-            if not os.path.exists(next_path):
-                is_broken_symlink = True
-
-                # The path original path of the broken symlink in the container
-                report_path = os.path.join(target_pki, os.path.relpath(src_path, backup_pki))
-                api.current_logger().warning('File {} is a broken symlink!'.format(report_path))
-                break
-
-            src_path = next_path
+        pointee = None
+        if os.path.islink(src_path):
+            pointee = os.path.join(target_userspace, os.readlink(src_path)[1:])
+
+            while os.path.islink(pointee):
+                # The symlink points to a path relative to the target userspace so
+                # we need to readjust it
+                pointee = os.path.join(target_userspace, os.readlink(src_path)[1:])
+                if not os.path.exists(pointee):
+                    is_broken_symlink = True
+
+                    # The path original path of the broken symlink in the container
+                    report_path = os.path.join(target_pki, os.path.relpath(src_path, backup_pki))
+                    api.current_logger().warning('File {} is a broken symlink!'.format(report_path))
+                    break
 
         if is_broken_symlink:
             continue
 
+        # Cleanup conflicting files
         run(['rm', '-rf', dst_path])
+
+        # Ensure destination exists
         parent_dir = os.path.dirname(dst_path)
         run(['mkdir', '-p', parent_dir])
-        run(['cp', '-a', src_path, dst_path])
+
+        # Copy the new file
+        run(['cp', '-R', '--preserve=all', src_path, dst_path])
 
 
 def _prep_repository_access(context, target_userspace):
@@ -401,6 +463,7 @@ def _prep_repository_access(context, target_userspace):
     backup_yum_repos_d = os.path.join(target_etc, 'yum.repos.d.backup')
 
     _copy_certificates(context, target_userspace)
+    context.call(['update-ca-trust', 'extract'])
 
     if not rhsm.skip_rhsm():
         run(['rm', '-rf', os.path.join(target_etc, 'rhsm')])

repos/system_upgrade/common/actors/targetuserspacecreator/tests/unit_test_targetuserspacecreator.py

@@ -1,5 +1,7 @@
 import os
+import subprocess
 from collections import namedtuple
+from pathlib import Path
 
 import pytest
 
@@ -48,6 +50,82 @@ def __exit__(self, exception_type, exception_value, traceback):
         pass
 
 
+def traverse_structure(structure, root=Path('/')):
+    for filename, links_to in structure.items():
+        filepath = root / filename
+
+        if isinstance(links_to, dict):
+            yield from traverse_structure(links_to, filepath)
+        else:
+            yield (filepath, links_to)
+
+
+def assert_directory_structure_matches(root, initial, expected):
+    for filepath, links_to in traverse_structure(expected, root=root / 'expected'):
+        assert filepath.exists()
+
+        if links_to is None:
+            assert filepath.is_file()
+            continue
+
+        assert filepath.is_symlink()
+        assert os.readlink(filepath) == str(root / 'expected' / links_to.lstrip('/'))
+
+
+@pytest.fixture
+def temp_directory_layout(tmp_path, initial_structure):
+    for filepath, links_to in traverse_structure(initial_structure, root=tmp_path / 'initial'):
+        file_path = tmp_path / filepath
+        file_path.parent.mkdir(parents=True, exist_ok=True)
+
+        if links_to is None:
+            file_path.touch()
+            continue
+
+        file_path.symlink_to(tmp_path / 'initial' / links_to.lstrip('/'))
+
+    (tmp_path / 'expected').mkdir()
+    assert (tmp_path / 'expected').exists()
+
+    return tmp_path
+
+
+# The semantics of initial_structure and expected_structure are as follows:
+#
+# 1. The outermost dictionary encodes the root of a directory structure
+#
+# 2. Depending on the value for a key in a dict, each key in the dictionary
+#    denotes the name of either a:
+#        a) directory -- if value is dict
+#        b) regular file -- if value is None
+#        c) symlink -- if a value is str
+#
+# 3. The value of a symlink entry is a absolut path to a file in the context of
+#    the structure.
+#
+@pytest.mark.parametrize('initial_structure,expected_structure', [
+    ({'dir': {'fileA': None}}, {'dir': {'fileA': None}}),
+    ({'dir': {'fileA': 'nonexistent'}}, {'dir': {}}),
+    ({'dir': {'fileA': '/dir/fileB', 'fileB': None}}, {'dir': {'fileA': '/dir/fileB', 'fileB': None}}),
+    ({'dir': {'fileA': '/dir/fileB', 'fileB': 'nonexistent'}},
+     {'dir': {}}),
+    ({'dir': {'fileA': '/dir/fileB', 'fileB': '/dir/fileC', 'fileC': None}},
+     {'dir': {'fileA': '/dir/fileB', 'fileB': '/dir/fileC', 'fileC': None}}),
+    ({'dir': {'fileA': '/dir/fileB', 'fileB': '/dir/fileC', 'fileC': '/outside/fileOut', 'fileE': None},
+      'outside': {'fileOut': '/outside/fileD', 'fileD': '/dir/fileE'}},
+     {'dir': {'fileA': '/dir/fileB', 'fileB': '/dir/fileC', 'fileC': '/dir/fileE'}}),
+    ]
+)
+def test_copy_decouple(monkeypatch, temp_directory_layout, initial_structure, expected_structure):
+    monkeypatch.setattr(userspacegen, 'run', subprocess.run)
+    userspacegen._copy_decouple(
+            str(temp_directory_layout / 'initial' / 'dir'),
+            str(temp_directory_layout / 'expected' / 'dir'),
+            )
+
+    assert_directory_structure_matches(temp_directory_layout, initial_structure, expected_structure)
+
+
 @pytest.mark.parametrize('result,dst_ver,arch,prod_type', [
     (os.path.join(_CERTS_PATH, '8.1', '479.pem'), '8.1', architecture.ARCH_X86_64, 'ga'),
     (os.path.join(_CERTS_PATH, '8.1', '419.pem'), '8.1', architecture.ARCH_ARM64, 'ga'),