format notebooks with isort

nwlandry · Jan 15, 2024 · 22776d6 · 22776d6
1 parent dc39beb
commit 22776d6
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Showing 8 changed files with 45 additions and 54 deletions.
diff --git a/Extra/fitting_ipn.ipynb b/Extra/fitting_ipn.ipynb
@@ -16,8 +16,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
+    "import numpy as np\n",
+    "\n",
     "from lcs import *"
    ]
   },

diff --git a/Extra/plot_frac_vs_beta.ipynb b/Extra/plot_frac_vs_beta.ipynb
@@ -6,9 +6,11 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import matplotlib.pyplot as plt\n",
     "import json\n",
+    "\n",
+    "import matplotlib.pyplot as plt\n",
     "import numpy as np\n",
+    "\n",
     "from lcs import *"
    ]
   },

diff --git a/Extra/plot_graph_topology.ipynb b/Extra/plot_graph_topology.ipynb
@@ -6,11 +6,12 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import seaborn as sns\n",
-    "import pandas as pd\n",
-    "import matplotlib.pyplot as plt\n",
     "import json\n",
-    "import numpy as np"
+    "\n",
+    "import matplotlib.pyplot as plt\n",
+    "import numpy as np\n",
+    "import pandas as pd\n",
+    "import seaborn as sns"
    ]
   },
   {

diff --git a/Extra/plot_infer_contagion_functions.ipynb b/Extra/plot_infer_contagion_functions.ipynb
@@ -17,11 +17,13 @@
    "outputs": [],
    "source": [
     "import json\n",
-    "import numpy as np\n",
+    "\n",
+    "import arviz as az\n",
     "import matplotlib.pyplot as plt\n",
+    "import numpy as np\n",
     "import seaborn as sns\n",
-    "from lcs import *\n",
-    "import arviz as az"
+    "\n",
+    "from lcs import *"
    ]
   },
   {

diff --git a/convergence/convergence_time_vs_size.ipynb b/convergence/convergence_time_vs_size.ipynb
@@ -6,13 +6,15 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import numpy as np\n",
+    "import time\n",
+    "\n",
     "import matplotlib.pyplot as plt\n",
-    "from lcs import *\n",
     "import networkx as nx\n",
+    "import numpy as np\n",
+    "from numpy.linalg import eigh\n",
     "from scipy.stats import beta\n",
-    "import time\n",
-    "from numpy.linalg import eigh"
+    "\n",
+    "from lcs import *"
    ]
   },
   {

diff --git a/convergence/determine_mcmc_parameters.ipynb b/convergence/determine_mcmc_parameters.ipynb
@@ -6,12 +6,13 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import numpy as np\n",
     "import matplotlib.pyplot as plt\n",
-    "from lcs import *\n",
     "import networkx as nx\n",
+    "import numpy as np\n",
+    "from numpy.linalg import eigh\n",
     "from scipy.stats import beta\n",
-    "from numpy.linalg import eigh"
+    "\n",
+    "from lcs import *"
    ]
   },
   {

diff --git a/plot_fig2.ipynb b/plot_fig2.ipynb
diff --git a/scripts/will/entropy_metrics/entropy_metrics.ipynb b/scripts/will/entropy_metrics/entropy_metrics.ipynb
@@ -9,18 +9,20 @@
     "import sys\n",
     "\n",
     "sys.path.append(\"../../../\")\n",
-    "import numpy as np\n",
+    "import random\n",
+    "import time\n",
+    "\n",
     "import matplotlib.pyplot as plt\n",
-    "from lcs import *\n",
     "import networkx as nx\n",
-    "from scipy.stats import beta\n",
-    "import time\n",
-    "from numpy.linalg import eigh\n",
-    "import random\n",
+    "import numpy as np\n",
     "import pandas as pd\n",
     "import seaborn as sns\n",
+    "from numpy.linalg import eigh\n",
+    "from scipy.stats import beta\n",
     "from tqdm import tqdm\n",
     "\n",
+    "from lcs import *\n",
+    "\n",
     "random.seed(1234)\n",
     "\n",
     "\n",
@@ -92,6 +94,7 @@
     "# x0 = np.zeros(n)\n",
     "# x0[random.randrange(n)] = 1\n",
     "\n",
+    "\n",
     "gamma0 = 0.1\n",
     "nu = eigh(A)[0][-1]\n",
     "b0 = 2 * gamma0 / nu\n",