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Julia Dependency Update #269

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Nov 2, 2023
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Julia Dependency Update #269

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92 changes: 47 additions & 45 deletions Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -42,9 +42,9 @@ version = "0.2.0"

[[deps.ArrayInterface]]
deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "eba0af42241f0cb648806604222bab1e064edb67"
git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0"
uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
version = "7.5.0"
version = "7.5.1"

[deps.ArrayInterface.extensions]
ArrayInterfaceBandedMatricesExt = "BandedMatrices"
Expand All @@ -62,17 +62,11 @@ version = "7.5.0"
StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"

[[deps.ArrayInterfaceCore]]
deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d"
uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2"
version = "0.1.29"

[[deps.ArrayLayouts]]
deps = ["FillArrays", "LinearAlgebra"]
git-tree-sha1 = "9a731850434825d183af39c6e6cd0a1c32dd7e20"
git-tree-sha1 = "af43df5704827c8618afd36eb56fcab20d3041ee"
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
version = "1.4.2"
version = "1.4.3"
weakdeps = ["SparseArrays"]

[deps.ArrayLayouts.extensions]
Expand Down Expand Up @@ -117,16 +111,18 @@ uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b"
version = "0.1.5"

[[deps.BoundaryValueDiffEq]]
deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NonlinearSolve", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools", "TruncatedStacktraces", "UnPack"]
git-tree-sha1 = "669135edbe5eabf8c69971f1a6c0936dd73688ae"
deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NonlinearSolve", "PreallocationTools", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools", "TruncatedStacktraces", "UnPack"]
git-tree-sha1 = "0033bf62d3a0e709a3b12498141cc9bffb8fb7c5"
uuid = "764a87c0-6b3e-53db-9096-fe964310641d"
version = "5.2.0"
version = "5.3.0"

[deps.BoundaryValueDiffEq.extensions]
BoundaryValueDiffEqODEInterfaceExt = "ODEInterface"
BoundaryValueDiffEqOrdinaryDiffEqExt = "OrdinaryDiffEq"

[deps.BoundaryValueDiffEq.weakdeps]
ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c"
OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"

[[deps.Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -280,9 +276,9 @@ version = "0.2.3"

[[deps.ConcurrentUtilities]]
deps = ["Serialization", "Sockets"]
git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e"
git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519"
uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
version = "2.2.1"
version = "2.3.0"

[[deps.ConstructionBase]]
deps = ["LinearAlgebra"]
Expand Down Expand Up @@ -351,9 +347,9 @@ version = "1.9.1"

[[deps.DiffEqBase]]
deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
git-tree-sha1 = "59842b690c2ed12428a741c1334f3c68d1377fb6"
git-tree-sha1 = "c8bc8487a7987c13576f25959ac11b25d5da84e2"
uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
version = "6.135.0"
version = "6.136.0"

[deps.DiffEqBase.extensions]
DiffEqBaseDistributionsExt = "Distributions"
Expand Down Expand Up @@ -828,9 +824,9 @@ version = "2.1.91+0"

[[deps.JuliaFormatter]]
deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"]
git-tree-sha1 = "b11c259ae111b08aabdc2ff5186dad12a95fedca"
git-tree-sha1 = "3d5b5b539e4606dcca0e6a467b98a64c8da4850b"
uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
version = "1.0.41"
version = "1.0.42"

[[deps.JumpProcesses]]
deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"]
Expand Down Expand Up @@ -879,9 +875,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
version = "2.10.1+0"

[[deps.LaTeXStrings]]
git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996"
git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
version = "1.3.0"
version = "1.3.1"

[[deps.LabelledArrays]]
deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"]
Expand Down Expand Up @@ -910,9 +906,9 @@ version = "0.16.1"

[[deps.LayoutPointers]]
deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"]
git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1"
git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277"
uuid = "10f19ff3-798f-405d-979b-55457f8fc047"
version = "0.1.14"
version = "0.1.15"

[[deps.Lazy]]
deps = ["MacroTools"]
Expand Down Expand Up @@ -1011,10 +1007,10 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[deps.LinearSolve]]
deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
git-tree-sha1 = "27732d23d88534a7b735dcf8f411daf34293a39e"
deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"]
git-tree-sha1 = "371e4ece4fc1341f54531dde75ae7d0b19257c2c"
uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
version = "2.14.0"
version = "2.15.0"

[deps.LinearSolve.extensions]
LinearSolveBandedMatricesExt = "BandedMatrices"
Expand Down Expand Up @@ -1068,16 +1064,22 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
version = "1.0.3"

[[deps.LoopVectorization]]
deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"]
git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2"
deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"]
git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894"
uuid = "bdcacae8-1622-11e9-2a5c-532679323890"
version = "0.12.165"
version = "0.12.166"
weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"]

[deps.LoopVectorization.extensions]
ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"]
SpecialFunctionsExt = "SpecialFunctions"

[[deps.MKL]]
deps = ["Artifacts", "Libdl", "LinearAlgebra", "MKL_jll"]
git-tree-sha1 = "100521a1d2181cb39036ee1a6955d6b9686bb363"
uuid = "33e6dc65-8f57-5167-99aa-e5a354878fb2"
version = "0.6.1"

[[deps.MKL_jll]]
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913"
Expand Down Expand Up @@ -1185,10 +1187,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
version = "1.2.0"

[[deps.NonlinearSolve]]
deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
git-tree-sha1 = "adbde57261effaa44b4d3d5942651a4bb22aefc3"
deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"]
git-tree-sha1 = "613f5d5b911ab761cc7f41191c197ba3d9ca9d78"
uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
version = "2.5.0"
version = "2.6.0"

[deps.NonlinearSolve.extensions]
NonlinearSolveBandedMatricesExt = "BandedMatrices"
Expand Down Expand Up @@ -1259,9 +1261,9 @@ version = "1.6.2"

[[deps.OrdinaryDiffEq]]
deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
git-tree-sha1 = "def999a7447854f0e9ca9fdda235e04a65916b76"
git-tree-sha1 = "f4bb6db58944af8d57da3cbb85e8bd96f9d8ea51"
uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
version = "6.58.0"
version = "6.58.1"

[[deps.PCRE2_jll]]
deps = ["Artifacts", "Libdl"]
Expand Down Expand Up @@ -1552,15 +1554,15 @@ version = "0.1.0"

[[deps.SLEEFPirates]]
deps = ["IfElse", "Static", "VectorizationBase"]
git-tree-sha1 = "897b39ec056c0619ea87adc7eeadba0bec0cf931"
git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf"
uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa"
version = "0.6.40"
version = "0.6.42"

[[deps.SciMLBase]]
deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
git-tree-sha1 = "1c2a4e245744dd76b2eb677d3535ffad16d8b989"
deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
git-tree-sha1 = "9e4c2902c2e8675c3b67eb24fd7f89defcbde9af"
uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
version = "2.5.0"
version = "2.6.0"

[deps.SciMLBase.extensions]
SciMLBasePartialFunctionsExt = "PartialFunctions"
Expand Down Expand Up @@ -1590,9 +1592,9 @@ version = "0.3.6"

[[deps.Scratch]]
deps = ["Dates"]
git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a"
git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
uuid = "6c6a2e73-6563-6170-7368-637461726353"
version = "1.2.0"
version = "1.2.1"

[[deps.SentinelArrays]]
deps = ["Dates", "Random"]
Expand Down Expand Up @@ -1668,9 +1670,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[deps.SparseDiffTools]]
deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
git-tree-sha1 = "590acc2c3baf98aaff7d2f1990a6f1de6138361e"
git-tree-sha1 = "bb0ff88a054f2dbf3d54d7630a42b743fcdfa21b"
uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
version = "2.9.1"
version = "2.9.2"

[deps.SparseDiffTools.extensions]
SparseDiffToolsEnzymeExt = "Enzyme"
Expand Down Expand Up @@ -1896,9 +1898,9 @@ version = "0.3.0"

[[deps.TriangularSolve]]
deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"]
git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb"
git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443"
uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf"
version = "0.1.19"
version = "0.1.20"

[[deps.Tricks]]
git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f"
Expand Down