precommit

spras/omicsintegrator1.py

@@ -192,7 +192,7 @@ def parse_output(raw_pathway_file, standardized_pathway_file):
         # I'm assuming from having read the documentation that we will be passing in optimalForest.sif
         # as raw_pathway_file, in which case the format should be edge1 interactiontype edge2.
         # if that assumption is wrong we will need to tweak things
-        
+
 
         df = raw_pathway_df(raw_pathway_file, header=None)
         if not df.empty:

spras/omicsintegrator2.py

@@ -150,13 +150,13 @@ def parse_output(raw_pathway_file, standardized_pathway_file):
         num_lines = sum(1 for line in open(raw_pathway_file))
         if num_lines < 2:
             df = pd.DataFrame(columns = ['Node1', 'Node2', 'Rank', 'Direction'])
-        else: 
+        else:
             df = pd.read_csv(raw_pathway_file, sep='\t', header=0)
             df = df[df['in_solution'] == True] # Check whether this column can be empty before revising this line
-            df = add_rank_column(df) 
+            df = add_rank_column(df)
             df = reinsert_direction_col_undirected(df)
             df.drop(columns=['cost', 'in_solution'], inplace = True)
             df.columns = ['Node1', 'Node2', 'Rank', "Direction"]
-        
+
         df.to_csv(standardized_pathway_file, header=True, index=False, sep='\t')
-        
+