generated from noaa-nwfsc/NWFSC-Template
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
f226a5e
commit 697fe68
Showing
1 changed file
with
9 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
## Tourmaline methods | ||
We ran Tourmaline workflow with docker interactively: | ||
``` | ||
sudo docker run -v $HOME:/data -it aomlomics/tourmaline /bin/bash -c "sh run_tourmaline" | ||
``` | ||
Where the run_tourmaline script contained the necessary snakemake commands to run the workflow with --jobs 30 (the workflow only uses up to 8 CPUs per rule) and conda as software deployment method. | ||
|
||
Our virtual machine was a n2-standard-16 (16 CPUs, 64 GB RAM) which uses Intel Cascade Lake processors and represents the newest general purpose processors. | ||
|