Tmdd model functions

[mattfidler]

No description provided.

[mattfidler]

@iamstein would you mind reviewing this.

[mattfidler]

@kiranmayi3595 if you could make sure every parameter has a label, I think that would be helpful. I noticed that some of the models have empty labels ("")

[mattfidler]

Also, it seems there are 1 and 2 compartment solutions. There should be only one compartment solutions with the Cl parametrization variant.

We may re-align about the naming conventions later.

[mattfidler]

We should also change the elimination throughout to be kel so that a parametric transformation function could be applied each model to re-parameterize as the modeler sees fit.

[mattfidler]

@kiranmayi3595 I am happy do these changes myself.

[iamstein]

For the compartment names too, for consistency I think we'd want something like:
central
peripheral
target (formerly T)
complex (formerly DT)
total_drug (formerly Dtot)
total_target (formerly Ttot)

[kiranmayi3595]

Hi @mattfidler and @iamstein , thank you for your comments. I will make these changes and update the models.

[iamstein]

Hi @kiranmayi3595. I'd recommended starting with just 4 models (parameterised by CL)as it might be the library could just consist of 4 and then the user could make additional modifications to get the other parameterizations.

Andy

[mattfidler]

This does not use the correct compartment names for the ODEs; it probably needs to be redone because of this...

[billdenney]

As there appear to be open issues here, I'm not yet merging these models for the upcoming release. Please let me know when they are ready to merge.