Merge branch '59-no-bootstrap-result-due-to-matrix-issues'

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: nlmixr2extra
 Title: Nonlinear Mixed Effects Models in Population PK/PD, Extra Support
     Functions
-Version: 2.0.8.9000
+Version: 2.0.9
 Authors@R: c(
     person("Matthew", "Fidler", email="[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-8538-6691")),
@@ -20,13 +20,13 @@ Description: Fit and compare nonlinear mixed-effects models in
     support functions like preconditioned fits
     <doi:10.1208/s12248-016-9866-5>, boostrap and stepwise covariate
     selection.
-Depends: 
+Depends:
     R (>= 4.0)
 License: GPL (>= 3)
 URL: https://nlmixr2.github.io/nlmixr2extra/,
     https://github.com/nlmixr2/nlmixr2extra/
 BugReports: https://github.com/nlmixr2/nlmixr2extra/issues/
-Imports: 
+Imports:
     checkmate,
     cli (>= 3.4.0),
     crayon,
@@ -44,20 +44,20 @@ Imports:
     stats,
     symengine,
     utils
-Suggests: 
+Suggests:
     brms,
     nlmixr2data,
     testthat (>= 3.0.0),
     withr,
     dplyr,
     devtools
-LinkingTo: 
+LinkingTo:
     Rcpp,
     RcppArmadillo
 Biarch: true
 Config/testthat/edition: 3
 Encoding: UTF-8
 NeedsCompilation: yes
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
 LazyData: true

NEWS.md

@@ -1,16 +1,18 @@
-# nlmixr2extra development version
+# nlmixr2extra 2.0.9
 
 * `bootstrapFit()` now will be more careful handling `NA` values so
   they do not completely affect results (Issue #59)
 
 * `bootstrapFit()` will now only take the correlation of the non-zero
   diagonals (Issue #59).
 
-# nlmixr2extra 2.0.9
-
 * New method for `knit_print()` will generate model equations for LaTeX
   reporting automatically.
 
+* Tests are now skipped if they contain linear compartment models that
+  need gradients when the gradients are not compiled (as in the case
+  of intel c++).
+
 # nlmixr2extra 2.0.8
 
 * Use `assignInMyNamespace()` instead of using the global assignment

tests/testthat/test-bootstrap.R

@@ -27,7 +27,7 @@ withr::with_tempdir({
         linCmt() ~ add(add.sd)
       })
     }
-
+    skip_if_not(rxode2parse::.linCmtSens())
     suppressMessages(suppressWarnings(
       fit <-
         nlmixr(
@@ -85,7 +85,7 @@ withr::with_tempdir({
         linCmt() ~ add(add.sd)
       })
     }
-
+    skip_if_not(rxode2parse::.linCmtSens())
     suppressMessages(suppressWarnings(
       fit <-
         nlmixr2(
@@ -131,7 +131,7 @@ withr::with_tempdir({
         linCmt() ~ add(add.sd)
       })
     }
-
+    skip_if_not(rxode2parse::.linCmtSens())
     suppressMessages(suppressWarnings(
       fit <-
         nlmixr2(
@@ -191,7 +191,7 @@ withr::with_tempdir({
           table = list(npde = TRUE, cwres = TRUE)
         )
     ))
-
+    skip_if_not(rxode2parse::.linCmtSens())
     suppressMessages(
       expect_error(fit1 <- nlmixr2extra:::bootstrapFit(fit, nboot = 2, restart = TRUE), NA)
     )