Version bump

nlmixr2 · Dec 12, 2023 · 2c848eb · 2c848eb
1 parent cac3d21
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Showing 12 changed files with 61 additions and 57 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: babelmixr2
 Type: Package
 Title: Use 'nlmixr2' to Interact with Open Source and Commercial Software
-Version: 0.1.1.9000
+Version: 0.1.2
 Authors@R: c(person("Matthew","Fidler", role = c("aut", "cre"), email = "[email protected]", comment=c(ORCID="0000-0001-8538-6691")),
            person("Bill", "Denney", email="[email protected]", role="aut", comment=c(ORCID="0000-0002-5759-428X")),
            person("Nook", "Fulloption", role="ctb", comment="goldfish art"))
@@ -35,12 +35,13 @@ Imports:
     digest,
     lotri,
     nlmixr2est (>= 2.1.6),
-    nonmem2rx (> 0.1.2),
+    nonmem2rx (>= 0.1.3),
     methods,
     qs,
     rex,
     rxode2
 RoxygenNote: 7.2.3
+Roxygen: list(markdown = TRUE)
 Config/testthat/edition: 3
 LinkingTo:
     Rcpp, rxode2, RcppArmadillo, RcppEigen, rxode2parse

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,4 @@
-# babelmixr2 (development version)
+# babelmixr2 0.1.2
 
 * Handle algebraic `mu` expressions
 

diff --git a/R/pknca.R b/R/pknca.R
@@ -2,17 +2,20 @@
 #'
 #' @details Parameters are estimated as follows:
 #'
-#' \itemize{
-#' \item{ka}{4 half-lives to Tmax but not higher than 3:  \code{log(2)/(tmax/4)}}
-#' \item{vc}{Inverse of dose-normalized Cmax}
-#' \item{cl}{Estimated as the median clearance}
-#' \item{vp,vp2}{2- and 4-fold the \code{vc}, respectively by default,
+#'
+#' - \code{ka} 4 half-lives to Tmax but not higher than 3:  \code{log(2)/(tmax/4)}
+#'
+#' - \code{vc} Inverse of dose-normalized Cmax
+#'
+#' - \code{cl} Estimated as the median clearance
+#'
+#' - \code{vp,vp2}2- and 4-fold the \code{vc}, respectively by default,
 #'   controlled by the \code{vpMult} and \code{vp2Mult} arguments to
-#'   \code{pkncaControl}}
-#' \item{q,q2}{0.5- and 0.25-fold the \code{cl}, respectively by default,
+#'   \code{pkncaControl}
+#'
+#' - \code{q,q2} 0.5- and 0.25-fold the \code{cl}, respectively by default,
 #'   controlled by the \code{qMult} and \code{q2Mult} arguments to
-#'   \code{pkncaControl}}
-#' }
+#'   \code{pkncaControl}
 #'
 #' The bounds for the parameter estimates are set to 10% of the first percentile
 #' and 10 times the 99th percentile.  (For ka, the lower bound is set to the

diff --git a/man/as.nlmixr2.Rd b/man/as.nlmixr2.Rd
diff --git a/man/bblDatToMonolix.Rd b/man/bblDatToMonolix.Rd
diff --git a/man/getStandardColNames.Rd b/man/getStandardColNames.Rd
diff --git a/man/modelUnitConversion.Rd b/man/modelUnitConversion.Rd
diff --git a/man/monolixControl.Rd b/man/monolixControl.Rd
diff --git a/man/nlmixr2Est.pknca.Rd b/man/nlmixr2Est.pknca.Rd
diff --git a/man/nonmemControl.Rd b/man/nonmemControl.Rd
diff --git a/man/pkncaControl.Rd b/man/pkncaControl.Rd
diff --git a/man/simplifyUnit.Rd b/man/simplifyUnit.Rd