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| Original file line number | Diff line number | Diff line change |
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| @@ -1 +1,20 @@ | ||
| """Module to put any functions that are referred to in AffineInitializer.yaml""" | ||
| """Module to put any functions that are referred to in the "callables" section of AffineInitializer.yaml""" | ||
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| import os | ||
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| def out_file_callable(output_dir, inputs, stdout, stderr): | ||
| outputs = _list_outputs( | ||
| output_dir=output_dir, inputs=inputs, stdout=stdout, stderr=stderr | ||
| ) | ||
| return outputs["out_file"] | ||
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| # Original source at L885 of <nipype-install>/interfaces/base/core.py | ||
| def _gen_filename(name, inputs=None, stdout=None, stderr=None, output_dir=None): | ||
| raise NotImplementedError | ||
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| # Original source at L834 of <nipype-install>/interfaces/ants/utils.py | ||
| def _list_outputs(inputs=None, stdout=None, stderr=None, output_dir=None): | ||
| return {"out_file": os.path.abspath(inputs.out_file)} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,18 @@ | ||
| """Module to put any functions that are referred to in AI.yaml""" | ||
| """Module to put any functions that are referred to in the "callables" section of AI.yaml""" | ||
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| def output_transform_callable(output_dir, inputs, stdout, stderr): | ||
| outputs = _list_outputs( | ||
| output_dir=output_dir, inputs=inputs, stdout=stdout, stderr=stderr | ||
| ) | ||
| return outputs["output_transform"] | ||
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| # Original source at L885 of <nipype-install>/interfaces/base/core.py | ||
| def _gen_filename(name, inputs=None, stdout=None, stderr=None, output_dir=None): | ||
| raise NotImplementedError | ||
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| # Original source at L539 of <nipype-install>/interfaces/ants/utils.py | ||
| def _list_outputs(inputs=None, stdout=None, stderr=None, output_dir=None): | ||
| return getattr(self, "_output") |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,60 @@ | ||
| """Module to put any functions that are referred to in ANTS.yaml""" | ||
| """Module to put any functions that are referred to in the "callables" section of ANTS.yaml""" | ||
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| import os | ||
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| def affine_transform_callable(output_dir, inputs, stdout, stderr): | ||
| outputs = _list_outputs( | ||
| output_dir=output_dir, inputs=inputs, stdout=stdout, stderr=stderr | ||
| ) | ||
| return outputs["affine_transform"] | ||
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| def inverse_warp_transform_callable(output_dir, inputs, stdout, stderr): | ||
| outputs = _list_outputs( | ||
| output_dir=output_dir, inputs=inputs, stdout=stdout, stderr=stderr | ||
| ) | ||
| return outputs["inverse_warp_transform"] | ||
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| def metaheader_callable(output_dir, inputs, stdout, stderr): | ||
| outputs = _list_outputs( | ||
| output_dir=output_dir, inputs=inputs, stdout=stdout, stderr=stderr | ||
| ) | ||
| return outputs["metaheader"] | ||
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| def metaheader_raw_callable(output_dir, inputs, stdout, stderr): | ||
| outputs = _list_outputs( | ||
| output_dir=output_dir, inputs=inputs, stdout=stdout, stderr=stderr | ||
| ) | ||
| return outputs["metaheader_raw"] | ||
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| def warp_transform_callable(output_dir, inputs, stdout, stderr): | ||
| outputs = _list_outputs( | ||
| output_dir=output_dir, inputs=inputs, stdout=stdout, stderr=stderr | ||
| ) | ||
| return outputs["warp_transform"] | ||
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| # Original source at L885 of <nipype-install>/interfaces/base/core.py | ||
| def _gen_filename(name, inputs=None, stdout=None, stderr=None, output_dir=None): | ||
| raise NotImplementedError | ||
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| # Original source at L242 of <nipype-install>/interfaces/ants/registration.py | ||
| def _list_outputs(inputs=None, stdout=None, stderr=None, output_dir=None): | ||
| outputs = {} | ||
| outputs["affine_transform"] = os.path.abspath( | ||
| inputs.output_transform_prefix + "Affine.txt" | ||
| ) | ||
| outputs["warp_transform"] = os.path.abspath( | ||
| inputs.output_transform_prefix + "Warp.nii.gz" | ||
| ) | ||
| outputs["inverse_warp_transform"] = os.path.abspath( | ||
| inputs.output_transform_prefix + "InverseWarp.nii.gz" | ||
| ) | ||
| # outputs['metaheader'] = os.path.abspath(inputs.output_transform_prefix + 'velocity.mhd') | ||
| # outputs['metaheader_raw'] = os.path.abspath(inputs.output_transform_prefix + 'velocity.raw') | ||
| return outputs |
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