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Mapping values to foci. #259

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Mapping values to foci. #259

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Commits on Jul 1, 2018

  1. - Brain.add_foci can now map values using foci color and size. 

    - added Brain.add_text3d for labeling foci in 3d
    @cristidonos
    cristidonos committed Jul 1, 2018
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Commits on Oct 23, 2018

  1. re-organized add_foci function to allow data mapping and extended plo… 

    …t_foci example
    @cristidonos
    cristidonos committed Oct 23, 2018
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Commits on Oct 26, 2018

  1. MRG: Fix scale_data_colormap and add FXAA (nipy#261) 

    * FIX: Render tweaks

* FIX: Use correct data_dict

* FIX: test backend

* FIX: Better check

* FIX: Old VTK
    @larsoner
    larsoner authored Oct 26, 2018
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Commits on Mar 22, 2019

  1. MRG: width/height in offscreen mode (nipy#265) 

    * FIX: width/height in offscreen mode

* MAINT: Sisyphus

* BUG: Modernize labels

* FIX: Circle

* FIX: Stretch

* FIX: More

* MAINT: Push the rock

* FIX: Skip for 3
    @larsoner @agramfort
    larsoner authored and agramfort committed Mar 22, 2019
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Commits on May 22, 2019

  1. Integrate better with Jupyter notebook (nipy#268) 

    * Integrate better with Jupyuter notebook

Mayavi can render things inside a jupyter notebook as either PNG or X3D.
This functionality can be enabled with `mlab.init_notebook()`.

This PR adds an `_ipython_display_` hook to the `Brain` class that
renders the brain accordgin to the Mayavi notebook integration settings.

* Add note on Jupyter notebook integration to docs

* Fix links in doc
    @wmvanvliet @larsoner
    wmvanvliet authored and larsoner committed May 22, 2019
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Commits on Jun 26, 2019

  1. MAINT: Update fsaverage (nipy#270) 

    * MAINT: Update fsaverage

* FIX: Bump to 3.5

* ENH: Run more on CircleCI

* MAINT: CI

* MAINT: CI

* MAINT: CI

* MAINT: Circle

* FIX: Pattern

* FIX: Circle

* FIX: Try again

* FIX: Better

* FIX: One more
    @larsoner
    larsoner authored Jun 26, 2019
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Commits on Jul 30, 2019

  1. MAINT: Fix ignores for CIs (nipy#272)

    @larsoner
    larsoner authored Jul 30, 2019
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  2. Set annotation LUT directly (nipy#271)

    @mwaskom @larsoner
    mwaskom authored and larsoner committed Jul 30, 2019
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Commits on Aug 12, 2019

  1. Allow painting all annotation vertices in a single color (nipy#273)

    @mwaskom @larsoner
    mwaskom authored and larsoner committed Aug 12, 2019
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Commits on Sep 9, 2019

  1. FIX: don't change view when adding foci (nipy#274)

    @christianbrodbeck @larsoner
    christianbrodbeck authored and larsoner committed Sep 9, 2019
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Commits on Oct 15, 2019

  1. ENH: Add option to smooth to nearest (nipy#275) 

    * ENH: Add option to smooth to nearest

* DOC: Update docstring

* FIX: Flake

* FIX: Undordered vertices are the worst

* FIX: Orders are hard

* DOC: Changes
    @larsoner
    larsoner authored Oct 15, 2019
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  2. MAINT: CircleCI for latest pip (nipy#277)

    @larsoner
    larsoner authored Oct 15, 2019
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Commits on Nov 1, 2019

  1. ENH: Add kwargs in Brain.add_* and pass it to mayavi modules (nipy#276) 

    * Feat: add kwargs in Brain.add_* and pass it to mayavi modules, so that we could directly manipulate mayavi display settings, like point resolution and overlay opacity.

* Fix: Fix code styles which failed in the flake test.

* Modify test_viz to pass the kwargs to the mayavi module.

* fix flake test.

* Specifying `kwargs` as `mlab_kws` and make the documentation more clear.

* Revert "Specifying `kwargs` as `mlab_kws` and make the documentation more clear."

This reverts commit c7a5912.

* Link mayavi documents.

* Give detailed explanations about the kwargs passed to the functions.

* Revert "Link mayavi documents."

This reverts commit 2c86a04.

* Change the position of line breaking.

* Fix the typo and unavailable links.

* Fix render errors.

* Revert "Fix render errors."

This reverts commit ac0b7b8.

* Fix render error.

* Improve code rendering.

* Revert "Fix render error."

This reverts commit bbf7631.

* Fix line breaking error.

* Revert "Fix line breaking error."

This reverts commit 6efccac.

* Fix line breaking error.

* Revert "Fix line breaking error."

This reverts commit a7abf61.

* Force line breaking to fix the rendering error on long code.

* Revert "Force line breaking to fix the rendering error on long code."

This reverts commit 6a9cdf1.

* Force line breaking to fix the rendering error on long code.

* Revert "Force line breaking to fix the rendering error on long code."

This reverts commit c7f6a9f.

* Force line breaking to fix the rendering error on long code.

* Revert "Force line breaking to fix the rendering error on long code."

This reverts commit de31e5f.

* Fix render error

Force line breaking to avoid render error.

* Render undocumented function as plain code.

* Fix sectioning.

* FIX: Formatting
    @DingkunLiu @larsoner
    DingkunLiu authored and larsoner committed Nov 1, 2019
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Commits on Dec 10, 2019

  1. BUG: Properly clean up on del

    @larsoner
    larsoner committed Dec 10, 2019
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Commits on Feb 3, 2020

  1. Merge pull request nipy#279 from larsoner/cleanup 

    BUG: Properly clean up on del
    @mwaskom
    mwaskom authored Feb 3, 2020
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Commits on Feb 6, 2020

  1. FIX: Safer exit

    @larsoner
    larsoner committed Feb 6, 2020
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Commits on Feb 7, 2020

  1. FIX: Actually close

    @larsoner
    larsoner committed Feb 7, 2020
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  2. FIX: Try again

    @larsoner
    larsoner committed Feb 7, 2020
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  3. FIX: Again again

    @larsoner
    larsoner committed Feb 7, 2020
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  4. FIX: Different

    @larsoner
    larsoner committed Feb 7, 2020
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  5. FIX: One more

    @larsoner
    larsoner committed Feb 7, 2020
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Commits on Feb 10, 2020

  1. FIX: Dont reuse by default

    @larsoner
    larsoner committed Feb 10, 2020
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  2. Merge pull request nipy#285 from larsoner/safer 

    MRG, FIX: Safer exit
    @mwaskom
    mwaskom authored Feb 10, 2020
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Commits on Feb 11, 2020

  1. Fix (nipy#286)

    @wmvanvliet
    wmvanvliet authored Feb 11, 2020
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Commits on Feb 21, 2020

  1. MRG, FIX: Fix bug with scale_data_colormap (nipy#287) 

    * FIX: Fix bug with scale_data_colormap

* FIX: Fix for deprecation

* FIX: One more
    @larsoner
    larsoner authored Feb 21, 2020
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  2. fix int (nipy#288)

    @kingjr
    kingjr authored Feb 21, 2020
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  3. Update __init__.py

    @larsoner
    larsoner authored Feb 21, 2020
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  4. Update __init__.py

    @larsoner
    larsoner authored Feb 21, 2020
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  5. FIX: CSS

    @larsoner
    larsoner committed Feb 21, 2020
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  6. FIX: Update changes

    @larsoner
    larsoner committed Feb 21, 2020
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Commits on Feb 26, 2020

  1. Set up CI with Azure Pipelines 

    [skip ci]
    @larsoner
    larsoner committed Feb 26, 2020
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  2. FIX: Remove force render

    @larsoner
    larsoner committed Feb 26, 2020
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  3. ENH: Azure

    @larsoner
    larsoner committed Feb 26, 2020
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  4. FIX: Missed

    @larsoner
    larsoner committed Feb 26, 2020
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  5. FIX: Missed again

    @larsoner
    larsoner committed Feb 26, 2020
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  6. FIX: Try again

    @larsoner
    larsoner committed Feb 26, 2020
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  7. FIX: Wrong call

    @larsoner
    larsoner committed Feb 26, 2020
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  8. FIX: Explicit close/del

    @larsoner
    larsoner committed Feb 26, 2020
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Commits on Feb 27, 2020

  1. FIX: Safer del

    @larsoner
    larsoner committed Feb 27, 2020
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  2. Merge pull request nipy#289 from larsoner/force 

    MRG, FIX: Remove force render
    @mwaskom
    mwaskom authored Feb 27, 2020
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Commits on May 18, 2020

  1. STY: Dont log info messages by default (nipy#293) 

    * FIX: Verbose

* FIX: MNE vers
    @larsoner
    larsoner authored May 18, 2020
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  2. ENH: Move up to 3.8 (nipy#294) 

    * ENH: Move up to 3.8

* FIX: Newer

* FIX: Newer
    @larsoner
    larsoner authored May 18, 2020
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Commits on Jun 11, 2020

  1. ENH: Add FXAA option (nipy#295) 

    * ENH: Add FXAA option

* FIX: Mayavi for VTK9
    @larsoner
    larsoner authored Jun 11, 2020
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Commits on Jun 23, 2020

  1. MRG, MAINT: Simpler vector params (nipy#291) 

    * MAINT: Simpler vector params

* FIX: Undo auto scaling

* FIX: Dup

* FIX: URL

* FIX: Better

* FIX: More tolerant of type
    @larsoner
    larsoner authored Jun 23, 2020
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  2. MAINT: Bump version

    @larsoner
    larsoner committed Jun 23, 2020
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  3. MAINT: Bump version

    @larsoner
    larsoner committed Jun 23, 2020
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Commits on Nov 11, 2020

  1. option to apply xfrom from surface files

    @cristidonos
    cristidonos committed Nov 11, 2020
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  2. merged changes by CD on top of nipy's f02cca8 version from Jun 23

    @cristidonos
    cristidonos committed Nov 11, 2020
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  3. merged changes by CD on top of nipy's f02cca8 version from Jun 23

    @cristidonos
    cristidonos committed Nov 11, 2020
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  4. Merge branch 'master' of https://github.com/cristidonos/PySurfer into… 

    … master

� Conflicts:
�	surfer/viz.py
    @cristidonos
    cristidonos committed Nov 11, 2020
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