RF: Remove much of the hardcoded T1w fields in favor of anat
#433
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@effigies This should be ready for review. I've tried to limit any breaking changes, but regardless this will need to be included in a new minor release |
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Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## master #433 +/- ##
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+ Coverage 66.37% 66.45% +0.08%
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Files 30 30
Lines 2079 2087 +8
Branches 249 250 +1
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+ Hits 1380 1387 +7
- Misses 698 699 +1
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0.16.0 (July 31, 2024) Start of the 0.16.x minor series. This release decouples much of the hardcoded T1w behavior in favor of T1w/T2w options, to allow easier integration with tools less reliant on a single anatomical scan. * ENH: Use genericised "anat" input/output for TemplateDimensions (#443) * ENH: Remove much of the hardcoded `T1w` fields in favor of `anat` (#433) * RF: Load package data with acres (#448) * RF: `space-fsaverage` to `sphere_reg` output files (#446) * MNT: Unpin libitk 5.3 (ANTs 2.5.3 is built with 5.4) (#445) * MNT: Clean up doc builds, environment, style checks (#444)
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This is a supplemental PR to nipreps/nibabies#360 - since nibabies also relies on smriprep, but may be processing in T2w space, this PR generalize many of the workflows/nodes/fields to account for other anatomical references.