FIX: Update outputnode spec, restore anat_ribbon

nipreps · Sep 29, 2023 · fe7332b · fe7332b
1 parent fcd3b70
commit fe7332b
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Showing 2 changed files with 16 additions and 2 deletions.
diff --git a/smriprep/data/io_spec.json b/smriprep/data/io_spec.json
@@ -163,6 +163,17 @@
         "suffix": "sphere",
         "extension": ".surf.gii"
       }
+    },
+    "masks": {
+      "anat_ribbon": {
+        "datatype": "anat",
+        "desc": "ribbon",
+        "suffix": "mask",
+        "extension": [
+          ".nii.gz",
+          ".nii"
+        ]
+      }
     }
   },
   "patterns": [

diff --git a/smriprep/utils/bids.py b/smriprep/utils/bids.py
@@ -38,15 +38,18 @@ def get_outputnode_spec():
     ['t1w_preproc', 't1w_mask', 't1w_dseg', 't1w_tpms',
     'std_preproc', 'std_mask', 'std_dseg', 'std_tpms',
     'anat2std_xfm', 'std2anat_xfm',
-    't1w_aseg', 't1w_aparc',
     't1w2fsnative_xfm', 'fsnative2t1w_xfm',
-    'surfaces', 'morphometrics', 'anat_ribbon']
+    'white', 'pial', 'midthickness', 'sphere',
+    'thickness', 'sulc', 'curv',
+    'sphere_reg', 'sphere_reg_fsLR', 'sphere_reg_msm',
+    'anat_ribbon']
 
     """
     spec = loads(Path(pkgrf("smriprep", "data/io_spec.json")).read_text())["queries"]
     fields = ["_".join((m, s)) for m in ("t1w", "std") for s in spec["baseline"].keys()]
     fields += [s for s in spec["std_xfms"].keys()]
     fields += [s for s in spec["surfaces"].keys()]
+    fields += [s for s in spec["masks"].keys()]
     return fields