Stable tests #1512
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name: Stable tests | |
on: | |
push: | |
branches: [ '*' ] | |
tags: [ '*' ] | |
pull_request: | |
branches: [ master, 'maint/*', 'next' ] | |
schedule: | |
- cron: '0 0 * * *' | |
defaults: | |
run: | |
shell: bash | |
concurrency: | |
group: python-${{ github.ref }} | |
cancel-in-progress: true | |
permissions: | |
contents: read | |
jobs: | |
check_if_skip: | |
runs-on: ubuntu-latest | |
outputs: | |
commit_message: ${{ steps.get_commit_message.outputs.commit_message }} | |
steps: | |
- name: Get repo | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.event.pull_request.head.sha }} | |
- name: Print head git commit message | |
id: get_commit_message | |
run: | | |
if [[ -z "$COMMIT_MSG" ]]; then | |
COMMIT_MSG=$(git show -s --format=%s) | |
else | |
COMMIT_MSG=$(echo $COMMIT_MSG | head -n 1) | |
fi | |
echo $COMMIT_MSG | |
echo "commit_message=$COMMIT_MSG" >> $GITHUB_OUTPUT | |
env: | |
COMMIT_MSG: ${{ github.event.head_commit.message }} | |
build: | |
needs: check_if_skip | |
if: "!contains(needs.check_if_skip.outputs.commit_message, '[skip ci]')" | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Display Python version | |
run: python -c "import sys; print(sys.version)" | |
- name: Build smriprep | |
run: pipx run build | |
- name: Check distributions | |
run: pipx run twine check dist/* | |
- uses: actions/upload-artifact@v4 | |
with: | |
name: dist | |
path: dist/ | |
test: | |
needs: [build] | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.10", "3.11", "3.12"] | |
install: [repo] | |
include: | |
- python-version: "3.11" | |
install: sdist | |
- python-version: "3.11" | |
install: wheel | |
- python-version: "3.11" | |
install: editable | |
env: | |
INSTALL_TYPE: ${{ matrix.install }} | |
FSLOUTPUTTYPE: NIFTI_GZ | |
steps: | |
- uses: actions/checkout@v4 | |
if: matrix.install == 'repo' || matrix.install == 'editable' | |
- name: Fetch packages | |
uses: actions/download-artifact@v4 | |
with: | |
name: dist | |
path: dist/ | |
if: matrix.install == 'sdist' || matrix.install == 'wheel' | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Select archive | |
run: | | |
if [ "$INSTALL_TYPE" = "sdist" ]; then | |
ARCHIVE=$( ls dist/*.tar.gz ) | |
elif [ "$INSTALL_TYPE" = "wheel" ]; then | |
ARCHIVE=$( ls dist/*.whl ) | |
elif [ "$INSTALL_TYPE" = "repo" ]; then | |
ARCHIVE="." | |
elif [ "$INSTALL_TYPE" = "editable" ]; then | |
ARCHIVE="-e ." | |
fi | |
echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV | |
- name: Install package | |
run: python -m pip install $ARCHIVE | |
- name: Install test dependencies | |
run: python -m pip install "smriprep[tests]" | |
- name: Run tests | |
run: pytest -sv --doctest-modules --cov smriprep --pyargs smriprep | |
- uses: codecov/codecov-action@v4 | |
name: Submit to CodeCov | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
style: | |
if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- run: pipx run ruff check smriprep | |
- run: pipx run ruff format --diff smriprep |