FIX: Enable fieldmapless by default in CLI (#426)

* FIX: Enable fieldmapless by default in CLI * FIX: Detect empty workflow before attempting to run
nipreps · Jan 18, 2024 · 2cd1d45 · 2cd1d45
1 parent 2db0774
commit 2cd1d45
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Showing 2 changed files with 8 additions and 2 deletions.
diff --git a/sdcflows/cli/main.py b/sdcflows/cli/main.py
@@ -139,6 +139,12 @@ def main(argv=None):
     if exitcode != 0:
         sys.exit(exitcode)
 
+    if len(sdcflows_wf.list_node_names()) == 0:
+        config.loggers.cli.critical(
+            'Workflow did not generate any jobs. Please check your inputs are valid.'
+        )
+        sys.exit(os.EX_USAGE)
+
     # Initialize nipype config
     config.nipype.init()
     # Make sure loggers are started

diff --git a/sdcflows/cli/parser.py b/sdcflows/cli/parser.py
@@ -248,8 +248,8 @@ def _bids_filter(value):
     g_outputs.add_argument(
         "--no-fmapless",
         action="store_false",
-        dest="fieldmapless",
-        default=False,
+        dest="fmapless",
+        default=True,
         help="Allow fieldmap-less estimation",
     )
     g_outputs.add_argument(