Merge pull request #346 from nipreps/fix/yoio-you-only-interpolate-once

FIX: Refactoring the ``B0FieldTransform`` implementation
nipreps · Aug 16, 2023 · 11fadb2 · 11fadb2
2 parents 375dd7a + 6e3de3a
commit 11fadb2
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diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -123,6 +123,13 @@ jobs:
             datalad install -r https://gin.g-node.org/nipreps-data/brain-extraction-tests
             datalad update --merge -d brain-extraction-tests/
             datalad get -r -J 2 -d brain-extraction-tests
+      
+      - run:
+          name: Install HCPh fieldmaps
+          command: |
+            datalad install -r https://github.com/nipreps-data/hcph-pilot_fieldmaps.git
+            datalad update -r --merge -d hcph-pilot_fieldmaps/
+            datalad get -r -J 2 -d hcph-pilot_fieldmaps/ hcph-pilot_fieldmaps/*
 
       - save_cache:
           key: data-v6-{{ .Branch }}-{{ .Revision }}

diff --git a/sdcflows/data/fmap-any_registration.json b/sdcflows/data/fmap-any_registration.json
@@ -18,5 +18,6 @@
     "transforms": [ "Rigid", "Rigid" ],
     "use_histogram_matching": [ true, true ],
     "winsorize_lower_quantile": 0.001,
-    "winsorize_upper_quantile": 0.999
+    "winsorize_upper_quantile": 0.999,
+    "write_composite_transform": false
 }
diff --git a/sdcflows/data/fmap-any_registration_testing.json b/sdcflows/data/fmap-any_registration_testing.json
@@ -18,5 +18,6 @@
     "transforms": [ "Rigid", "Rigid" ],
     "use_histogram_matching": [ true, true ],
     "winsorize_lower_quantile": 0.005,
-    "winsorize_upper_quantile": 0.998
+    "winsorize_upper_quantile": 0.998,
+    "write_composite_transform": false
 }