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DOC : add how to read fmriprep visual report #21

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7e85ecb
doc : convert to markdown the "How To Read fMRIPrep Visual report"
sarenseeley Dec 16, 2022
8908a2a
doc : complete how to read the normalization visualisation with the i…
celprov Dec 16, 2022
35903e2
doc : complete how to read the brain mask and segmentation visualisat…
celprov Dec 16, 2022
3a07ad1
doc : complete how to read surface reconstruction visualisation with …
celprov Dec 16, 2022
9a6466c
doc : modify layout of functional textual summary section
celprov Dec 16, 2022
e684ce2
fix : remove subject labels from the figure extracted from the supple…
celprov Dec 16, 2022
e7414b2
fix : remove section presenting the susceptibility distortion correction
celprov Dec 16, 2022
82cc395
doc : separate how to read brain mask and segmentation visualisation …
celprov Dec 16, 2022
fc839d7
enh : complete the section about brain mask and confound estimation
celprov Jan 23, 2023
55ddf7b
enh : add link to our frontiers QC paper
celprov Jan 26, 2023
f2981fe
enh: add info about cumulative variance explained by CompCor
celprov Jan 26, 2023
72152db
enh : complete information about the sections about and methods
celprov Jan 26, 2023
30196dd
enh: reorganize section about regressors correlation
celprov Jan 26, 2023
7a4231d
enh: add details about BOLD summary
celprov Feb 13, 2023
0c0a9bd
enh : add details about ICA-AROMA
celprov Feb 13, 2023
119bb98
sty : add captions to figures
celprov Feb 13, 2023
6d69d2a
update visual reports document
sarenseeley Mar 5, 2023
cc19b90
fix : Correct typos
celprov Mar 29, 2023
04c8f0d
Merge pull request #1 from sarenseeley/doc/howto_read_fmriprep_visual…
celprov Mar 29, 2023
fcea9c4
fix : make the document less prescriptive by replacing good/bad by be…
celprov Mar 29, 2023
b1db375
sty : replace crown with brain edge to be more consistent
celprov Mar 29, 2023
393296a
DOC: Add guide to TOC
effigies Jun 12, 2023
3e519cd
Apply suggestions from code review
celprov Nov 22, 2023
4617047
fix: switch to ASCII quotes and apostroph
celprov Nov 22, 2023
6149a7a
Merge remote-tracking branch 'upstream/mkdocs' into doc/howto_read_fm…
celprov Nov 22, 2023
680118c
sty: change layout, eliminate bulletpoints which were taking too much…
celprov Nov 22, 2023
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Binary file added docs/assets/fmriprep_visual_report/inu.png
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260 changes: 260 additions & 0 deletions docs/assets/fmriprep_visual_report/noise-in-segmentation.svg
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297 changes: 297 additions & 0 deletions docs/users/howto_read_fmriprep_visual_report.md
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2 changes: 2 additions & 0 deletions mkdocs.yml
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,8 @@ nav:
- Executing with Singularity: apps/singularity.md
- Presentations: users/talks.md
- Educational: users/educational.md
- Guides:
- How to read an fMRIPrep visual report: users/howto_read_fmriprep_visual_report.md
- Documentation (devs):
- Developer Environment: devs/devenv.md
- Versions Matrix: devs/versions.md
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