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auto: deploy new website
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nipreps-bot committed Sep 10, 2024
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```
* .larger[*fMRIPrep*]
``` Bash
docker pull nipreps/fmriprep:24.0.1rc0
docker pull nipreps/fmriprep:24.1.0rc0
```
]
]
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11 changes: 5 additions & 6 deletions assets/fmriprep-bootcamp-geneva2024/day1-06-apptainer/index.html
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#SBATCH --time=1:00:00 #NOTE: likely longer than generally needed
#SBATCH --ntasks 1
#SBATCH --cpus-per-task=16
#SBATCH --mem-per-cpu=4G
#SBATCH --partition=public-cpu
#SBATCH --mem-per-cpu=1G
#SBATCH --partition=shared-cpu
#SBATCH --reservation=share_courvoisier_workshop_570

# Outputs ----------------------------------
#SBATCH --output log/%x-%A-%a.out
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We only run T1w images (`-m T1w`), we make it more verbose `-vv`,
we name the dataset (`--dsname bootcamp`), we allow the workflow
to run up to 16 processes with up to 8 cores each `--nprocs 16 --omp-nthreads 8`,
and preserve the intermediate files at `$HOME/scratch/work`:
to run up to 16 processes with up to 8 cores each `--nprocs 16 --omp-nthreads 8`:
``` Bash
-m T1w -vv --dsname bootcamp --nprocs 16 --omp-nthreads 8 \
-w $HOME/scratch/work
-m T1w -vv --dsname bootcamp --nprocs 16 --omp-nthreads 8
```

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