ENH: Add flag for multi-step registration to adult templates #415
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR adds a flag,
--multi-step-reg
, that when enabled alters registrations toMNI152NLin6Asym
by first registering the anatomical template toMNIInfant:cohort-X
, and then concatenating that transform in addition to pre-computed ones (MNIInfant:cohort-X
->MNI152NLin6Asym
). If results are promising, other adult templates, such asMNI152NLin2009cAsym
will follow.ATM, this PR fails to include the precomputed transforms, as they are quite a few (11 MNIInfant cohorts) andto/from
transforms. I was originally planning on including them in nibabies, but the 3.2GB size is too much.For the time being, the transforms are hosted at an OSF repository, until they have been finalized and structured for TemplateFlow. We use pooch to fetch the needed transform.