Merge pull request #24 from oesteban/test/add-data

[FIX] Upgrade eve to overcome lowercase bug

dockereve-master/docker-compose.yml

@@ -10,7 +10,7 @@ nginx:
     links:
         - eve:eve
         - swagger_ui:swagger_ui
-        
+
 swagger_ui:
     image: swaggerapi/swagger-ui:v3.0.12
     environment:

dockereve-master/eve-app/app.py

@@ -1,9 +1,11 @@
+# -*- coding: utf-8 -*-
+# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
+# vi: set ft=python sts=4 ts=4 sw=4 et:
+
 from eve import Eve
 from eve.auth import TokenAuth
 from eve_swagger import swagger
 from settings import my_settings as ms
-import os
-script_dir = os.path.dirname(os.path.abspath(__file__))
 
 class TokenAuth(TokenAuth):
     def check_auth(self, token, allowed_roles, resource, method):
@@ -22,4 +24,3 @@ def check_auth(self, token, allowed_roles, resource, method):
 
 if __name__ == '__main__':
     app.run(host='0.0.0.0')
-

dockereve-master/eve-app/requirements.txt

@@ -1,3 +1,3 @@
 gunicorn==19.3.0
-eve==0.6.3
+eve==0.7.4
 eve-swagger==0.0.7

test/T1w/validData/sub-51475_T1w.json

@@ -0,0 +1,83 @@
+{
+  "bids_meta": {
+    "modality": "T1w",
+    "subject_id": "51475"
+  },
+  "cjv": 0.7481285789173965,
+  "cnr": 1.799069212614209,
+  "efc": 0.6902700762172372,
+  "fber": 595.3549194335938,
+  "fwhm_avg": 4.565343333333334,
+  "fwhm_x": 4.41164,
+  "fwhm_y": 4.58993,
+  "fwhm_z": 4.69446,
+  "icvs_csf": 0.18919747705234416,
+  "icvs_gm": 0.382565309920799,
+  "icvs_wm": 0.42823721302685686,
+  "inu_med": 0.7953134775161743,
+  "inu_range": 0.44703104794025417,
+  "provenance": {
+    "md5sum": "ab33bc1ca8c5a2708a936e5c3401cd9d",
+    "mriqc_pred": 0,
+    "settings": {
+      "testing": false
+    },
+    "software": "mriqc",
+    "version": "0.9.4"
+  },
+  "qi_1": 0.0,
+  "qi_2": 0.006308660513689068,
+  "rpve_csf": 25.03189049139931,
+  "rpve_gm": 12.273034012957833,
+  "rpve_wm": 13.015768127704394,
+  "size_x": 176,
+  "size_y": 256,
+  "size_z": 256,
+  "snr_csf": 3.3956995765079268,
+  "snr_gm": 13.680884861568199,
+  "snr_total": 12.67382623327664,
+  "snr_wm": 20.944894261753795,
+  "snrd_csf": 31.162335138430436,
+  "snrd_gm": 60.91207729999789,
+  "snrd_total": 54.38264336254042,
+  "snrd_wm": 71.07351764919294,
+  "spacing_x": 1.0,
+  "spacing_y": 1.0,
+  "spacing_z": 1.0,
+  "summary_bg_k": 2.82986187339563,
+  "summary_bg_mad": 9.21813678741455,
+  "summary_bg_mean": 32.454341888427734,
+  "summary_bg_median": 30.527267456054688,
+  "summary_bg_n": 1482703.0,
+  "summary_bg_p05": 19.065499114990235,
+  "summary_bg_p95": 52.49725570678711,
+  "summary_bg_stdv": 10.568535804748535,
+  "summary_csf_k": 29.474733122709587,
+  "summary_csf_mad": 87.17237854003906,
+  "summary_csf_mean": 460.5165100097656,
+  "summary_csf_median": 438.4715576171875,
+  "summary_csf_n": 39655.0,
+  "summary_csf_p05": 324.8987121582031,
+  "summary_csf_p95": 657.1927124023437,
+  "summary_csf_stdv": 129.12391662597656,
+  "summary_gm_k": 0.0867551356909293,
+  "summary_gm_mad": 58.64889144897461,
+  "summary_gm_mean": 863.1846313476562,
+  "summary_gm_median": 857.067138671875,
+  "summary_gm_n": 31052.0,
+  "summary_gm_p05": 768.9516632080079,
+  "summary_gm_p95": 978.3906677246093,
+  "summary_gm_stdv": 62.64604568481445,
+  "summary_wm_k": -0.07945658595236704,
+  "summary_wm_mad": 48.3164176940918,
+  "summary_wm_mean": 1005.5453491210938,
+  "summary_wm_median": 1000.0443115234375,
+  "summary_wm_n": 250836.0,
+  "summary_wm_p05": 936.5255737304688,
+  "summary_wm_p95": 1092.2911376953125,
+  "summary_wm_stdv": 47.74635314941406,
+  "tpm_overlap_csf": 0.22250480949878693,
+  "tpm_overlap_gm": 0.4691166281700134,
+  "tpm_overlap_wm": 0.5316591858863831,
+  "wm2max": 0.730122180731227
+}