ENH(dMRI): Deal gracefully with small CC masks #1311
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oesteban
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Do you have an example dataset where this happened? Maybe in these cases we could do a second pass with a different set of parameters? |
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Yes, I have a dataset with a failed DWI run that lasted for just a few initial directions and then was killed. I believe we discussed spatial normalization into MNI -- we could bring the mask from there instead, WDYT? |
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I think that's a good idea! In that case, I might check for outliers in terms of the PDD/FA and exclude those. |
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The diffusion pipeline's calculation of IQMs choked if the cc mask was too small. Added a counter-measure and issue a warning in this case.