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RF: Replace config.execution.fmriprep_dir uses in BIDSURI calls with output_dir parameter #3338

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merged 1 commit into from
Jul 30, 2024
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RF: Replace config.execution.fmriprep_dir uses in BIDSURI calls with output_dir parameter #3338

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12 changes: 6 additions & 6 deletions fmriprep/workflows/bold/outputs.py
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Original file line number Diff line number Diff line change
Expand Up @@ -441,7 +441,7 @@ def init_ds_boldref_wf(
BIDSURI(
numinputs=1,
dataset_links=config.execution.dataset_links,
out_dir=str(config.execution.fmriprep_dir.absolute()),
out_dir=str(output_dir),
),
name='sources',
)
Expand Down Expand Up @@ -490,7 +490,7 @@ def init_ds_boldmask_wf(
BIDSURI(
numinputs=1,
dataset_links=config.execution.dataset_links,
out_dir=str(config.execution.fmriprep_dir.absolute()),
out_dir=str(output_dir),
),
name='sources',
)
Expand Down Expand Up @@ -540,7 +540,7 @@ def init_ds_registration_wf(
BIDSURI(
numinputs=1,
dataset_links=config.execution.dataset_links,
out_dir=str(config.execution.fmriprep_dir.absolute()),
out_dir=str(output_dir),
),
name='sources',
)
Expand Down Expand Up @@ -590,7 +590,7 @@ def init_ds_hmc_wf(
BIDSURI(
numinputs=1,
dataset_links=config.execution.dataset_links,
out_dir=str(config.execution.fmriprep_dir.absolute()),
out_dir=str(output_dir),
),
name='sources',
)
Expand Down Expand Up @@ -655,7 +655,7 @@ def init_ds_bold_native_wf(
BIDSURI(
numinputs=3,
dataset_links=config.execution.dataset_links,
out_dir=str(config.execution.fmriprep_dir.absolute()),
out_dir=str(output_dir),
),
name='sources',
)
Expand Down Expand Up @@ -783,7 +783,7 @@ def init_ds_volumes_wf(
BIDSURI(
numinputs=6,
dataset_links=config.execution.dataset_links,
out_dir=str(config.execution.fmriprep_dir.absolute()),
out_dir=str(output_dir),
),
name='sources',
)
Expand Down
2 changes: 1 addition & 1 deletion fmriprep/workflows/bold/resampling.py
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Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@ def init_bold_surf_wf(
BIDSURI(
numinputs=1,
dataset_links=config.execution.dataset_links,
out_dir=str(config.execution.fmriprep_dir.absolute()),
out_dir=str(output_dir),
),
name='surfs_sources',
)
Expand Down