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Add metadata for motion parameters #3245

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merged 7 commits into from
Mar 4, 2024
Merged

Add metadata for motion parameters #3245

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6ce9e06
Add metadata for base motion parameters.
tsalo Mar 2, 2024
0100609
Update the metadata.
tsalo Mar 2, 2024
bc6be11
Switch from double-quotes to single-quotes.
tsalo Mar 2, 2024
0121be2
Fix motion regressor descriptions.
tsalo Mar 2, 2024
d30c1b1
Update fmriprep/workflows/bold/confounds.py
tsalo Mar 2, 2024
64d1b41
Merge remote-tracking branch 'upstream/master' into motion-metadata
tsalo Mar 2, 2024
83f77a1
Merge branch 'motion-metadata' of https://github.com/tsalo/fmriprep i…
tsalo Mar 2, 2024
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23 changes: 22 additions & 1 deletion fmriprep/workflows/bold/confounds.py
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Original file line number Diff line number Diff line change
Expand Up @@ -413,10 +413,31 @@ def init_bold_confs_wf(
name='crowncc_metadata_fmt',
)

# Combine all confounds metadata
mrg_conf_metadata = pe.Node(
niu.Merge(3), name='merge_confound_metadata', run_without_submitting=True
niu.Merge(4), name='merge_confound_metadata', run_without_submitting=True
)
# Tissue mean time series
mrg_conf_metadata.inputs.in3 = {label: {'Method': 'Mean'} for label in signals_class_labels}
# Movement parameters
mrg_conf_metadata.inputs.in4 = {
'trans_x': {'Description': 'Translation along left-right axis.', 'Units': 'mm'},
'trans_y': {'Description': 'Translation along anterior-posterior axis.', 'Units': 'mm'},
'trans_z': {'Description': 'Translation along superior-inferior axis.', 'Units': 'mm'},
'rot_x': {
'Description': 'Rotation about left-right axis. Also known as "pitch".',
'Units': 'rad',
},
'rot_y': {
'Description': 'Rotation about anterior-posterior axis. Also known as "roll".',
'Units': 'rad',
},
'rot_z': {
'Description': 'Rotation about superior-inferior axis. Also known as "yaw".',
'Units': 'rad',
},
'framewise_displacement': {'Units': 'mm'},
}
mrg_conf_metadata2 = pe.Node(
DictMerge(), name='merge_confound_metadata2', run_without_submitting=True
)
Expand Down