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nipreps · Mar 28, 2024 · 9f16c3e · 9f16c3e
1 parent b27e889
commit 9f16c3e
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/fmriprep/cli/workflow.py b/fmriprep/cli/workflow.py
@@ -116,7 +116,7 @@ def build_workflow(config_file, retval):
     ]
 
     if config.execution.derivatives:
-        init_msg += [f'Searching for derivatives: {config.execution.derivatives}.']
+        init_msg += [f'Searching for derivatives: {list(config.execution.derivatives.values())}.']
 
     if config.execution.fs_subjects_dir:
         init_msg += [f"Pre-run FreeSurfer's SUBJECTS_DIR: {config.execution.fs_subjects_dir}."]

diff --git a/fmriprep/workflows/base.py b/fmriprep/workflows/base.py
@@ -249,7 +249,7 @@ def init_single_subject_wf(subject_id: str):
 
         std_spaces = spaces.get_spaces(nonstandard=False, dim=(3,))
         std_spaces.append('fsnative')
-        for deriv_dir in config.execution.derivatives:
+        for deriv_dir in config.execution.derivatives.values():
             anatomical_cache.update(
                 collect_anat_derivatives(
                     derivatives_dir=deriv_dir,
@@ -653,7 +653,7 @@ def init_single_subject_wf(subject_id: str):
 
             entities = extract_entities(bold_series)
 
-            for deriv_dir in config.execution.derivatives:
+            for deriv_dir in config.execution.derivatives.values():
                 functional_cache.update(
                     collect_derivatives(
                         derivatives_dir=deriv_dir,