doc: Fix warnings/errors in workflow visualization

nipreps · Jul 16, 2024 · 86adc7b · 86adc7b
1 parent fb2f478
commit 86adc7b
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Showing 3 changed files with 4 additions and 1 deletion.
diff --git a/fmriprep/workflows/bold/apply.py b/fmriprep/workflows/bold/apply.py
@@ -36,6 +36,8 @@ def init_bold_volumetric_resample_wf(
                 'PhaseEncodingDirection': 'j-',
                 'TotalReadoutTime': 0.03
             },
+            mem_gb={'resampled': 1},
+            jacobian=True,
             fieldmap_id='my_fieldmap',
         )
 

diff --git a/fmriprep/workflows/bold/registration.py b/fmriprep/workflows/bold/registration.py
@@ -80,7 +80,7 @@ def init_bold_reg_wf(
                                   omp_nthreads=1,
                                   use_bbr=True,
                                   bold2anat_dof=9,
-                                  bold2anat_init='auto')
+                                  bold2anat_init='t2w')
 
     Parameters
     ----------

diff --git a/fmriprep/workflows/bold/stc.py b/fmriprep/workflows/bold/stc.py
@@ -73,6 +73,7 @@ def init_bold_stc_wf(
 
             from fmriprep.workflows.bold import init_bold_stc_wf
             wf = init_bold_stc_wf(
+                mem_gb={'filesize': 1},
                 metadata={"RepetitionTime": 2.0,
                           "SliceTiming": [0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9]},
                 )