TEST: Ensure the first sbref files are loadable

nipreps · Jul 10, 2024 · 2516724 · 2516724
1 parent f58b2ab
commit 2516724
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diff --git a/fmriprep/workflows/bold/tests/test_base.py b/fmriprep/workflows/bold/tests/test_base.py
@@ -56,15 +56,18 @@ def test_bold_wf(
         bold_series = [
             str(bids_root / 'sub-01' / 'func' / 'sub-01_task-rest_run-1_bold.nii.gz'),
         ]
+        sbref = str(bids_root / 'sub-01' / 'func' / 'sub-01_task-rest_run-1_sbref.nii.gz')
     elif task == 'nback':
         bold_series = [
             str(bids_root / 'sub-01' / 'func' / f'sub-01_task-nback_echo-{i}_bold.nii.gz')
             for i in range(1, 4)
         ]
+        sbref = str(bids_root / 'sub-01' / 'func' / 'sub-01_task-nback_echo-1_sbref.nii.gz')
 
     # The workflow will attempt to read file headers
     for path in bold_series:
         img.to_filename(path)
+    img.to_filename(sbref)
 
     with mock_config(bids_dir=bids_root):
         config.workflow.bold2anat_init = bold2anat_init

diff --git a/fmriprep/workflows/bold/tests/test_fit.py b/fmriprep/workflows/bold/tests/test_fit.py
@@ -89,15 +89,19 @@ def test_bold_fit_precomputes(
         bold_series = [
             str(bids_root / 'sub-01' / 'func' / 'sub-01_task-rest_run-1_bold.nii.gz'),
         ]
+        sbref = str(bids_root / 'sub-01' / 'func' / 'sub-01_task-rest_run-1_sbref.nii.gz')
     elif task == 'nback':
         bold_series = [
             str(bids_root / 'sub-01' / 'func' / f'sub-01_task-nback_echo-{i}_bold.nii.gz')
             for i in range(1, 4)
         ]
+        sbref = str(bids_root / 'sub-01' / 'func' / 'sub-01_task-nback_echo-1_sbref.nii.gz')
 
     # The workflow will attempt to read file headers
     for path in bold_series:
         img.to_filename(path)
+    # Single volume sbref; multi-volume tested in test_base
+    img.slicer[:, :, :, 0].to_filename(sbref)
 
     dummy_nifti = str(tmp_path / 'dummy.nii')
     dummy_affine = str(tmp_path / 'dummy.txt')