FIX: Validate and summarize multi-volume sbrefs

nipreps · Jul 9, 2024 · 0beceec · 0beceec
1 parent ff1b199
commit 0beceec
Showing 1 changed file with 8 additions and 1 deletion.
diff --git a/fmriprep/workflows/bold/fit.py b/fmriprep/workflows/bold/fit.py
@@ -464,7 +464,14 @@ def init_bold_fit_wf(
         config.loggers.workflow.info('Stage 3: Adding coregistration boldref workflow')
 
         # Select initial boldref, enhance contrast, and generate mask
-        fmapref_buffer.inputs.sbref_files = sbref_files
+        if sbref_files:
+            raw_sbref_wf = init_raw_boldref_wf(
+                name='raw_sbref_wf',
+                bold_file=sbref_files,
+                multiecho=len(sbref_files) > 1,
+            )
+            workflow.connect(raw_sbref_wf, 'outputnode.boldref', fmapref_buffer, 'sbref_files')
+
         enhance_boldref_wf = init_enhance_and_skullstrip_bold_wf(omp_nthreads=omp_nthreads)
 
         ds_coreg_boldref_wf = init_ds_boldref_wf(