Update more.

pyproject.toml

@@ -171,6 +171,10 @@ ignore = [
   "S311",  # We are not using random for cryptographic purposes
   "ISC001",
   "S603",
+  "PT023",
+  "S113",
+  "S202",
+  "S602",
 ]
 
 [tool.ruff.lint.flake8-quotes]

src/fmripost_rapidtide/cli/run.py

@@ -141,7 +141,9 @@ def main():
 
     config.loggers.workflow.log(
         15,
-        '\n'.join(['fMRIPost-Rapidtide config:'] + [f'\t\t{s}' for s in config.dumps().splitlines()]),
+        '\n'.join(
+            ['fMRIPost-Rapidtide config:'] + [f'\t\t{s}' for s in config.dumps().splitlines()]
+        ),
     )
     config.loggers.workflow.log(25, 'fMRIPost-Rapidtide started!')
     errno = 1  # Default is error exit unless otherwise set

src/fmripost_rapidtide/cli/version.py

@@ -66,7 +66,10 @@ def check_latest():
     if latest is None or outdated is True:
         response = None
         with suppress(Exception):
-            response = requests.get(url='https://pypi.org/pypi/fmripost_rapidtide/json', timeout=1.0)
+            response = requests.get(
+                url='https://pypi.org/pypi/fmripost_rapidtide/json',
+                timeout=1.0,
+            )
 
         if response and response.status_code == 200:
             versions = [Version(rel) for rel in response.json()['releases'].keys()]

src/fmripost_rapidtide/interfaces/bids.py

@@ -12,7 +12,9 @@
 bids_config = Config.load('bids')
 deriv_config = Config.load('derivatives')
 
-fmripost_rapidtide_entities = {v['name']: v['pattern'] for v in fmripost_rapidtide_spec['entities']}
+fmripost_rapidtide_entities = {
+    v['name']: v['pattern'] for v in fmripost_rapidtide_spec['entities']
+}
 merged_entities = {**bids_config.entities, **deriv_config.entities}
 merged_entities = {k: v.pattern for k, v in merged_entities.items()}
 merged_entities = {**merged_entities, **fmripost_rapidtide_entities}

src/fmripost_rapidtide/interfaces/nilearn.py

@@ -2,13 +2,11 @@
 
 import os
 
-import numpy as np
 from nipype.interfaces.base import (
     BaseInterfaceInputSpec,
     File,
     SimpleInterface,
     TraitedSpec,
-    traits,
 )
 from nipype.interfaces.nilearn import NilearnBaseInterface
 

src/fmripost_rapidtide/workflows/base.py

@@ -40,7 +40,6 @@
 
 from fmripost_rapidtide import config
 from fmripost_rapidtide.utils.utils import _get_wf_name, update_dict
-from fmripost_rapidtide.workflows.resampling import init_resample_volumetric_wf
 
 
 def init_fmripost_rapidtide_wf():